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The map label for this gene is traC [H]

Identifier: 115352457

GI number: 115352457

Start: 2653394

End: 2655787

Strand: Direct

Name: traC [H]

Synonym: Bamb_2406

Alternate gene names: 115352457

Gene position: 2653394-2655787 (Clockwise)

Preceding gene: 115352456

Following gene: 115352458

Centisome position: 74.61

GC content: 61.7

Gene sequence:

>2394_bases
ATGAGCGTTAATGTAGAACAAGAACGCATGCGCGCGGCACTGAGCCACGTACCGGCAGACGACCGCGATACGTGGGTTCA
GATGGGTATGGCTATCAAGGCCGAGTTCGGCGAAGCCGGGTTCGACTTCTGGGACGACTGGTCGCGTTCTGCCTCGAACT
ACAGCGAGGCCGATGCGAAATCGGTCTGGAAGTCGTTTCGCTCGGGCGGTATCACGATCGCCAGTCTGTTCAAGCGAGCG
ATCGAGCATGGCTACCGTGAAAGCGAGCCCATGACCGCGCTGTCGGCCGACGAGCGCGAACGCCGCCGAGTTGAACGTGA
TCGTGAAGCGGCCGCCGCCGCAGAGATCCACCAACGCACGCAGGCGGCCGCGGCCACCAGGGCACGCAATCTCTGGGAGA
AGGCCGGTACCGTTCATGCGGACCACGCCTACGTCCGCGCGAAGCGAATCAAGCCCTACGGAGCGAAGCAACTGCGTGAC
CAGCTCGTCGTCAAGCTGCAGGACATTGACGGCGAGCACCATTCCGCACAATACATCCAGGCAGATGGTCACAAAACCTT
CCAGACCGGTGGCCGAATCAGCGGGTGCTTCGTCGTGGTCAGTGCCGGAGTCAAGCCGAATGGCAAGACACCGCTGCTAA
TCTGCGAGGGTTACGCGACGGCCTGTTCGCTTCACGAAGCAACGGGTTATCCCGTCGCTGCGGCTATGAATGCCGGTAAC
CTTCTGAACGTCGCGCGCGCCTGGCGCCAAAAGCATCCTGAGCTGCGTATTGTGCTCTGTGCGGACGACGACGCGGAAAC
TGCCGGTAATCCGGGCATGAACAAGGCAACCGAGGCAGCGCGCGCGGTCGCTGCATTTCTAGCGGTGCCTGACTTCGGTA
AAGACCGCCCCGCACAAGTATCGGATTTCAATGACCTGCACTGCCTCGATGGGCTCGAGGTGGTACGACGCTGCGTCGAC
GCGGCGACTGCGGCGGTCGACGCCACCGCCCCTAAGAAGCGCCCGGCGCCGACCGTCAACCTCTCCTGCGCGGCCGACAT
CGTGCCGGAGCCGATTCACTGGCTCTGGCCTGGCTGGCTGCCTGCCGGCAAGCTCTCGATCCTCGCCGGGCAACCTGGGT
GCGGAAAAACGACCATTGCCATTTCGCTGTCGTCTGCCATCTCGAACGGCGCAGAGTGGCCGGACGGTGCACGCTGCAAA
GCGCCGGGAAACGTTTTGATCTGGACCGGAGAAGACGGGCTCGCCGATACGCTTGTCCCTCGCCTTATGGCAGCCGGCGC
TGATCTCAGGCGCGTTTTCTTCGTGGAGTCGATCACGAATGAGGCGGGCGGGCTCCAGCCATTCGATCCAAGCCGCGATG
TTCCCATTCTGGCCGAGCGCGTCGAGCAGATCGGCGGTGCGAGCATGCTTGTCGTCGATCCAATCATCAGTGTGGTGAAC
GGCGACTCTCACAAGTCCGGCGACGTTCGGAAATCGCTTCAGCCGCTGATCGACCTCGGGGCTGCCCACGGGTGCGCAAT
CCTCGGCATCACGCACTTCTCGAAGGGCTCGAAGGGCTCATCGCCGACCGAGCGCATTCTTGGCTCGCAGGCGTTCGGCG
CCGCTGCGCGGATGATTCTGGTCGCCGGCAAGGATGACGCGTCAGACCGCCGGATCTTCGCCAAGTCGAAATGCAATATC
GCCGGCGATTCCGGGGGGTTCGAGTATGCGATCGAAACGCTCGACGCTCAGGACGGTCTCGCATCAAGCCGGATCGCATG
GGGCGAACCTCTCGACGGCTCGGCGCGCGAGATCCTCCGCGAACTGGAGGCCGATGACCAGGACACCGACGAGCAGAACG
AGCGCGAATCGAAGTTCGAGCGTGCACGTTGCATGCTTTACGAATGGCTAACTCCTTTCATGAGCACCAAGGAGATGAAA
GCAGCGGCCCAGGCCGAAGGCGTGAGCTGGCGTATGGTGGAAGCTGCCAAGGCCGCCGAGGTGAAGGCCGGCAACAAAAT
CCGAGCCGTGAAGCATGGCAAGGATTGGGGATGGATTTGGGATAATCACGACGCCAAGTACGGCGATTCAACTCCGCACT
CGCAGATCGTCTCAAGTCCGCAAGAAATTCAAGTCCGCAAAGGCGATTGCGGAGTTGAATCCATTATCCAGCAAGGATCA
GAAGCCAAGTCCGCAAGTCCGCAGTCGGTTGGCGGGGTTGCCGGCATTGCCCACACATGTCCGCAATCCCCCGTCAACTC
CGTACACTCAGGAAATCATTGCGGAGTTGCGGACTTGACGGCAAACCCTTACCCATCAAGGGAGTCAACTCCGCAATCAC
GTCCGCATCCCGTCTCAGACTGCGGACTTGACGGTGATGTCGCGGCGGCGGCCGAACTGGAGGACGACGTATGA

Upstream 100 bases:

>100_bases
CGGATTCTGTGCTCCGCGCTCGGACGGCTGAGAAGCTCGCGGCCGGAAAATCTCGTCGTGTACGGATCCCTGAGCAGTCC
TCAACGCTCGAGGTGGTTTG

Downstream 100 bases:

>100_bases
GCATTGTTGCGATTTTGAGCAAAGCCAGATCGCTGGGCATACGTCTGAGCGTCGCGGGAGACGTTGTGAAAATGAAGGGG
CCGCCCGATGCGATCGCAGC

Product: TOPRIM domain-containing protein

Products: NA

Alternate protein names: Replication primase [H]

Number of amino acids: Translated: 797; Mature: 796

Protein sequence:

>797_residues
MSVNVEQERMRAALSHVPADDRDTWVQMGMAIKAEFGEAGFDFWDDWSRSASNYSEADAKSVWKSFRSGGITIASLFKRA
IEHGYRESEPMTALSADERERRRVERDREAAAAAEIHQRTQAAAATRARNLWEKAGTVHADHAYVRAKRIKPYGAKQLRD
QLVVKLQDIDGEHHSAQYIQADGHKTFQTGGRISGCFVVVSAGVKPNGKTPLLICEGYATACSLHEATGYPVAAAMNAGN
LLNVARAWRQKHPELRIVLCADDDAETAGNPGMNKATEAARAVAAFLAVPDFGKDRPAQVSDFNDLHCLDGLEVVRRCVD
AATAAVDATAPKKRPAPTVNLSCAADIVPEPIHWLWPGWLPAGKLSILAGQPGCGKTTIAISLSSAISNGAEWPDGARCK
APGNVLIWTGEDGLADTLVPRLMAAGADLRRVFFVESITNEAGGLQPFDPSRDVPILAERVEQIGGASMLVVDPIISVVN
GDSHKSGDVRKSLQPLIDLGAAHGCAILGITHFSKGSKGSSPTERILGSQAFGAAARMILVAGKDDASDRRIFAKSKCNI
AGDSGGFEYAIETLDAQDGLASSRIAWGEPLDGSAREILRELEADDQDTDEQNERESKFERARCMLYEWLTPFMSTKEMK
AAAQAEGVSWRMVEAAKAAEVKAGNKIRAVKHGKDWGWIWDNHDAKYGDSTPHSQIVSSPQEIQVRKGDCGVESIIQQGS
EAKSASPQSVGGVAGIAHTCPQSPVNSVHSGNHCGVADLTANPYPSRESTPQSRPHPVSDCGLDGDVAAAAELEDDV

Sequences:

>Translated_797_residues
MSVNVEQERMRAALSHVPADDRDTWVQMGMAIKAEFGEAGFDFWDDWSRSASNYSEADAKSVWKSFRSGGITIASLFKRA
IEHGYRESEPMTALSADERERRRVERDREAAAAAEIHQRTQAAAATRARNLWEKAGTVHADHAYVRAKRIKPYGAKQLRD
QLVVKLQDIDGEHHSAQYIQADGHKTFQTGGRISGCFVVVSAGVKPNGKTPLLICEGYATACSLHEATGYPVAAAMNAGN
LLNVARAWRQKHPELRIVLCADDDAETAGNPGMNKATEAARAVAAFLAVPDFGKDRPAQVSDFNDLHCLDGLEVVRRCVD
AATAAVDATAPKKRPAPTVNLSCAADIVPEPIHWLWPGWLPAGKLSILAGQPGCGKTTIAISLSSAISNGAEWPDGARCK
APGNVLIWTGEDGLADTLVPRLMAAGADLRRVFFVESITNEAGGLQPFDPSRDVPILAERVEQIGGASMLVVDPIISVVN
GDSHKSGDVRKSLQPLIDLGAAHGCAILGITHFSKGSKGSSPTERILGSQAFGAAARMILVAGKDDASDRRIFAKSKCNI
AGDSGGFEYAIETLDAQDGLASSRIAWGEPLDGSAREILRELEADDQDTDEQNERESKFERARCMLYEWLTPFMSTKEMK
AAAQAEGVSWRMVEAAKAAEVKAGNKIRAVKHGKDWGWIWDNHDAKYGDSTPHSQIVSSPQEIQVRKGDCGVESIIQQGS
EAKSASPQSVGGVAGIAHTCPQSPVNSVHSGNHCGVADLTANPYPSRESTPQSRPHPVSDCGLDGDVAAAAELEDDV
>Mature_796_residues
SVNVEQERMRAALSHVPADDRDTWVQMGMAIKAEFGEAGFDFWDDWSRSASNYSEADAKSVWKSFRSGGITIASLFKRAI
EHGYRESEPMTALSADERERRRVERDREAAAAAEIHQRTQAAAATRARNLWEKAGTVHADHAYVRAKRIKPYGAKQLRDQ
LVVKLQDIDGEHHSAQYIQADGHKTFQTGGRISGCFVVVSAGVKPNGKTPLLICEGYATACSLHEATGYPVAAAMNAGNL
LNVARAWRQKHPELRIVLCADDDAETAGNPGMNKATEAARAVAAFLAVPDFGKDRPAQVSDFNDLHCLDGLEVVRRCVDA
ATAAVDATAPKKRPAPTVNLSCAADIVPEPIHWLWPGWLPAGKLSILAGQPGCGKTTIAISLSSAISNGAEWPDGARCKA
PGNVLIWTGEDGLADTLVPRLMAAGADLRRVFFVESITNEAGGLQPFDPSRDVPILAERVEQIGGASMLVVDPIISVVNG
DSHKSGDVRKSLQPLIDLGAAHGCAILGITHFSKGSKGSSPTERILGSQAFGAAARMILVAGKDDASDRRIFAKSKCNIA
GDSGGFEYAIETLDAQDGLASSRIAWGEPLDGSAREILRELEADDQDTDEQNERESKFERARCMLYEWLTPFMSTKEMKA
AAQAEGVSWRMVEAAKAAEVKAGNKIRAVKHGKDWGWIWDNHDAKYGDSTPHSQIVSSPQEIQVRKGDCGVESIIQQGSE
AKSASPQSVGGVAGIAHTCPQSPVNSVHSGNHCGVADLTANPYPSRESTPQSRPHPVSDCGLDGDVAAAAELEDDV

Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]

COG id: COG4643

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013610
- InterPro:   IPR006171 [H]

Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 85471; Mature: 85340

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNVEQERMRAALSHVPADDRDTWVQMGMAIKAEFGEAGFDFWDDWSRSASNYSEADAK
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCCCHHHHH
SVWKSFRSGGITIASLFKRAIEHGYRESEPMTALSADERERRRVERDREAAAAAEIHQRT
HHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QAAAATRARNLWEKAGTVHADHAYVRAKRIKPYGAKQLRDQLVVKLQDIDGEHHSAQYIQ
HHHHHHHHHHHHHHHCCEECCHHHHHHHHCCCCCHHHHHHHHEEEHCCCCCCCCCCCEEE
ADGHKTFQTGGRISGCFVVVSAGVKPNGKTPLLICEGYATACSLHEATGYPVAAAMNAGN
CCCCEEHHCCCCCEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHCCCCCEEEECCCCH
LLNVARAWRQKHPELRIVLCADDDAETAGNPGMNKATEAARAVAAFLAVPDFGKDRPAQV
HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
SDFNDLHCLDGLEVVRRCVDAATAAVDATAPKKRPAPTVNLSCAADIVPEPIHWLWPGWL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCC
PAGKLSILAGQPGCGKTTIAISLSSAISNGAEWPDGARCKAPGNVLIWTGEDGLADTLVP
CCCCEEEEECCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
RLMAAGADLRRVFFVESITNEAGGLQPFDPSRDVPILAERVEQIGGASMLVVDPIISVVN
HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHC
GDSHKSGDVRKSLQPLIDLGAAHGCAILGITHFSKGSKGSSPTERILGSQAFGAAARMIL
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHCCHHHHCEEEEEE
VAGKDDASDRRIFAKSKCNIAGDSGGFEYAIETLDAQDGLASSRIAWGEPLDGSAREILR
EECCCCCCCCEEEECCCCCCCCCCCCCEEHEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
ELEADDQDTDEQNERESKFERARCMLYEWLTPFMSTKEMKAAAQAEGVSWRMVEAAKAAE
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
VKAGNKIRAVKHGKDWGWIWDNHDAKYGDSTPHSQIVSSPQEIQVRKGDCGVESIIQQGS
HCCCCEEEEEECCCCCCCEECCCCCCCCCCCCHHHHHCCCHHEEEECCCCCHHHHHHCCC
EAKSASPQSVGGVAGIAHTCPQSPVNSVHSGNHCGVADLTANPYPSRESTPQSRPHPVSD
CCCCCCCCCCCCHHHHHHHCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH
CGLDGDVAAAAELEDDV
CCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
SVNVEQERMRAALSHVPADDRDTWVQMGMAIKAEFGEAGFDFWDDWSRSASNYSEADAK
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCHHHHHHHHCCCCCHHHHH
SVWKSFRSGGITIASLFKRAIEHGYRESEPMTALSADERERRRVERDREAAAAAEIHQRT
HHHHHHHCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QAAAATRARNLWEKAGTVHADHAYVRAKRIKPYGAKQLRDQLVVKLQDIDGEHHSAQYIQ
HHHHHHHHHHHHHHHCCEECCHHHHHHHHCCCCCHHHHHHHHEEEHCCCCCCCCCCCEEE
ADGHKTFQTGGRISGCFVVVSAGVKPNGKTPLLICEGYATACSLHEATGYPVAAAMNAGN
CCCCEEHHCCCCCEEEEEEEECCCCCCCCCCEEEECCCHHHHHHHHCCCCCEEEECCCCH
LLNVARAWRQKHPELRIVLCADDDAETAGNPGMNKATEAARAVAAFLAVPDFGKDRPAQV
HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
SDFNDLHCLDGLEVVRRCVDAATAAVDATAPKKRPAPTVNLSCAADIVPEPIHWLWPGWL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCHHHCCCCC
PAGKLSILAGQPGCGKTTIAISLSSAISNGAEWPDGARCKAPGNVLIWTGEDGLADTLVP
CCCCEEEEECCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHH
RLMAAGADLRRVFFVESITNEAGGLQPFDPSRDVPILAERVEQIGGASMLVVDPIISVVN
HHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEHHHHHHHHHC
GDSHKSGDVRKSLQPLIDLGAAHGCAILGITHFSKGSKGSSPTERILGSQAFGAAARMIL
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHCCHHHHCEEEEEE
VAGKDDASDRRIFAKSKCNIAGDSGGFEYAIETLDAQDGLASSRIAWGEPLDGSAREILR
EECCCCCCCCEEEECCCCCCCCCCCCCEEHEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
ELEADDQDTDEQNERESKFERARCMLYEWLTPFMSTKEMKAAAQAEGVSWRMVEAAKAAE
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHH
VKAGNKIRAVKHGKDWGWIWDNHDAKYGDSTPHSQIVSSPQEIQVRKGDCGVESIIQQGS
HCCCCEEEEEECCCCCCCEECCCCCCCCCCCCHHHHHCCCHHEEEECCCCCHHHHHHCCC
EAKSASPQSVGGVAGIAHTCPQSPVNSVHSGNHCGVADLTANPYPSRESTPQSRPHPVSD
CCCCCCCCCCCCHHHHHHHCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH
CGLDGDVAAAAELEDDV
CCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1818755 [H]