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The map label for this gene is ydcO [H]

Identifier: 115352424

GI number: 115352424

Start: 2618738

End: 2619949

Strand: Direct

Name: ydcO [H]

Synonym: Bamb_2373

Alternate gene names: 115352424

Gene position: 2618738-2619949 (Clockwise)

Preceding gene: 115352423

Following gene: 115352425

Centisome position: 73.63

GC content: 70.13

Gene sequence:

>1212_bases
ATGAATCCTTCGCCCACCGCGAGCGCAGCGCGCGCCGGCGGCCGCCGCTTTTTCACCGATACGTCCGTCTCCGCGCTCGT
CGCCGGCTTCGTCGCGATGATGACGGGCTACACGAGCTCGCTCGTGCTGATGTTCCAGGCCGGTCGCGCCGCGCACCTGA
GCGACGCGCAGATCTCGTCGTGGATCTGGGCGCTGTCGATCGGCATGGCGCTGACGACGATCGGGCTGTCGCTGCGCTTT
CGCGCGCCCATCGTGGTCGCCTGGTCGACGCCCGGCGCCGCGCTGCTGATCGCGTCGCTGCCCGGCGTGCCGTATCCCGA
GGCGATCGGCGCGTTCGTCGTGTGCGCGCTGCTGCTGACCGCGATCGGCGTGAGCGGGCTGTTCGACACGCTGATGCGGC
GCATTCCGGCCGGGATCGCGGCCGCGTTGCTCGCGGGCATCCTGTTCGAGATCGGCATCGAGATCTTCCGCGCCGCGCAG
TTCCAGACCGCGCTCGTGCTCGCGATGTTCTTCACGTACCTGATCGTCAAGCGGCTCGCGCCGCGCTACGCGATCGTCAC
GACGCTGATCGTCGGCACCGCGGTGGCCGGCGGCCTCGGCCTGCTCGACTTCAGCCGCTTCCACATCGCGCTCGCGCAGC
CCGTGTTCACCATGCCCGCGTTCTCGCTCGCTTCGATCGTCAGCATCGGCATTCCGCTGTTCGTCGTCGCGATGGCGTCG
CAGAACGTGCCGGGCATCGCGGTGCTGCGCGCGGACGGCTACGCGACGCCTTCGTCGCCGCTGATCGCGACCACCGGCCT
CGCATCGCTGCTGCTCGCGCCGTTCGGCTCGCACGGCGTGAACCTCGCGGCGATCACCGCAGCGATCTGCACCGGCCCCG
AAGCGCACGAGGACCACGCGAAGCGCTACACGGCCGCCGTGTGGTGCGGCACGTTCTACCTGATCGCCGGGATCTTCGGC
GCGACGATCGCCGCGCTGTTCGCGGCGCTGCCGAAGGCGCTCGTCGTGTCGGTCGCCGCGCTCGCGCTGTTCGGCTCGAT
CATGAGCGGGCTCGCGAACGCGATGCAGGACGTGAAGCAGCGCGAGGCCGCGCTCGTCACGTTCATGGTCACCGCGTCGG
GACTCACGCTGCTGTCGATCGGCTCGGCGTTCTGGGGGCTCGTCGCGGGAATCGTCACGCAGGTGATCCTGAACGCGCGG
CGCCCCGCGTAG

Upstream 100 bases:

>100_bases
TCGCGGGCCTCGAAACCGCGATGCGCGCGCTCAGCAAGTAACGAACCCAACCCGCAGACACGAAGGCCGCGTCCGAGCGG
CCCTCCCCCCCGGAGATAGC

Downstream 100 bases:

>100_bases
CGCCGCCCCACGGCGGGGGCCCGCCCTGCAAACGGCACGCCAAAACGTGCGCGACACGAATCGGGCCTAAAATGATGAAT
CGGAGGCGGCGCCCGGCGCC

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MNPSPTASAARAGGRRFFTDTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMALTTIGLSLRF
RAPIVVAWSTPGAALLIASLPGVPYPEAIGAFVVCALLLTAIGVSGLFDTLMRRIPAGIAAALLAGILFEIGIEIFRAAQ
FQTALVLAMFFTYLIVKRLAPRYAIVTTLIVGTAVAGGLGLLDFSRFHIALAQPVFTMPAFSLASIVSIGIPLFVVAMAS
QNVPGIAVLRADGYATPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHAKRYTAAVWCGTFYLIAGIFG
ATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQREAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNAR
RPA

Sequences:

>Translated_403_residues
MNPSPTASAARAGGRRFFTDTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMALTTIGLSLRF
RAPIVVAWSTPGAALLIASLPGVPYPEAIGAFVVCALLLTAIGVSGLFDTLMRRIPAGIAAALLAGILFEIGIEIFRAAQ
FQTALVLAMFFTYLIVKRLAPRYAIVTTLIVGTAVAGGLGLLDFSRFHIALAQPVFTMPAFSLASIVSIGIPLFVVAMAS
QNVPGIAVLRADGYATPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHAKRYTAAVWCGTFYLIAGIFG
ATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQREAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNAR
RPA
>Mature_403_residues
MNPSPTASAARAGGRRFFTDTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISSWIWALSIGMALTTIGLSLRF
RAPIVVAWSTPGAALLIASLPGVPYPEAIGAFVVCALLLTAIGVSGLFDTLMRRIPAGIAAALLAGILFEIGIEIFRAAQ
FQTALVLAMFFTYLIVKRLAPRYAIVTTLIVGTAVAGGLGLLDFSRFHIALAQPVFTMPAFSLASIVSIGIPLFVVAMAS
QNVPGIAVLRADGYATPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHAKRYTAAVWCGTFYLIAGIFG
ATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQREAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNAR
RPA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=373, Percent_Identity=46.6487935656836, Blast_Score=320, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41575; Mature: 41575

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSPTASAARAGGRRFFTDTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISS
CCCCCCCHHHHCCCCEEECCCHHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCHHHHHH
WIWALSIGMALTTIGLSLRFRAPIVVAWSTPGAALLIASLPGVPYPEAIGAFVVCALLLT
HHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
AIGVSGLFDTLMRRIPAGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKRLA
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRYAIVTTLIVGTAVAGGLGLLDFSRFHIALAQPVFTMPAFSLASIVSIGIPLFVVAMAS
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHC
QNVPGIAVLRADGYATPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHA
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHH
KRYTAAVWCGTFYLIAGIFGATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNARRPA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNPSPTASAARAGGRRFFTDTSVSALVAGFVAMMTGYTSSLVLMFQAGRAAHLSDAQISS
CCCCCCCHHHHCCCCEEECCCHHHHHHHHHHHHHHCCHHHHHHHEECCCCCCCCHHHHHH
WIWALSIGMALTTIGLSLRFRAPIVVAWSTPGAALLIASLPGVPYPEAIGAFVVCALLLT
HHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
AIGVSGLFDTLMRRIPAGIAAALLAGILFEIGIEIFRAAQFQTALVLAMFFTYLIVKRLA
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PRYAIVTTLIVGTAVAGGLGLLDFSRFHIALAQPVFTMPAFSLASIVSIGIPLFVVAMAS
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHC
QNVPGIAVLRADGYATPSSPLIATTGLASLLLAPFGSHGVNLAAITAAICTGPEAHEDHA
CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHH
KRYTAAVWCGTFYLIAGIFGATIAALFAALPKALVVSVAALALFGSIMSGLANAMQDVKQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAALVTFMVTASGLTLLSIGSAFWGLVAGIVTQVILNARRPA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]