Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352423

Identifier: 115352423

GI number: 115352423

Start: 2617503

End: 2618678

Strand: Direct

Name: 115352423

Synonym: Bamb_2372

Alternate gene names: NA

Gene position: 2617503-2618678 (Clockwise)

Preceding gene: 115352422

Following gene: 115352424

Centisome position: 73.6

GC content: 65.56

Gene sequence:

>1176_bases
ATGCTGCTCAATTTCTTCTACGCGCTGCGCGCAGCCAAGCTGCCCGTCTCGGTGAAGGAATACCTGACGCTGCTCGAATC
GCTGAAGGCCGGGCTGATCTCGCCGTCGATCGACGCGTTCTACTTCCTCGCGCGCATGACGCTCGTCAAGGACGAGCAGT
ACTTCGACAAGTTCGACCAGGCGTTCGGCGCGTATTTCCACGGCGTGTCCGCGTTGCCGTCCGAAGCATTCGACCTGCCG
CTCGACTGGCTCGAGAAGCGTCTCGAACGCGAGCTGTCGCCGGAGGAAAAGGCGCAGATCGACGCGATGGGCGGGCTCGA
CAAGCTGATGGAGCGCCTGAAGGAACTGCTCGACGAGCAGAAGGAACGCCACGAAGGCGGCAACAAGTGGATCGGCACGG
GCGGCACGTCGCCGTTCGGGCACGGCGGCTACAACCCCGAAGGCATGCGCATCGGCGGCCCGTCGAACGGCAACCGCACG
GCGGTCAAGGTGTGGGAGGCGCGCGCGTACCGCGACTACGACGATTCGGTCGAGATCGGCACGCGCAACATCAAGGTCGC
GCTGCGGCGCCTGCGCCGCTTCGCGCGCGAAGGCGCGGCCGAGGAGCTCGACCTGCCCGGCACGATCCGCAGCACGGCCG
CGAATGCCGGCTGGCTCGACCTGCGGATGGTGCCCGAGCGTCACAACAACGTGAAGGTGCTGATGCTGCTCGACGTCGGC
GGCTCGATGGACGACCACATCAAGCGCACCGAGGAGCTGTTCTCCGCCGCGAAGGCCGAGTTCAAGCACCTGGAGTTCTA
CTACTTCCACAACTGCGTGTACGACCACCTGTGGAAGAACAACCGCCGCCGTCATTCGGAGCGCACCGCGACGTGGGACG
TGCTGCACAAGTTCACGCCCGACTACAAGCTGATCTTCGTCGGCGACGCGACGATGAGCCCGTACGAAGTGCTGCAGCCC
GGCGGCTCGGTCGAATACAACAACCCGGAAGCCGGCGCCGTCTGGTTGCGCCGCCTCGCCGACCAGTTCCCCCACCATGC
ATGGCTGAACCCCGAGCCCGAGCGGCTATGGGAATACCGGCAATCGGTCGCGGTGATCCGCGACCTGCTCGGCCAGCGCA
TGTATCCGCTCACGCTCGCGGGCCTCGAAACCGCGATGCGCGCGCTCAGCAAGTAA

Upstream 100 bases:

>100_bases
CGCGGGCGCGCTGCTGAAGAACGAGCAGGATCTGAGCCTGCTCGAGCGGCTCGTCTACATGAACCGGCACAACCGGTAAC
CCACCCGCGAAGGCCCGGCC

Downstream 100 bases:

>100_bases
CGAACCCAACCCGCAGACACGAAGGCCGCGTCCGAGCGGCCCTCCCCCCCGGAGATAGCATGAATCCTTCGCCCACCGCG
AGCGCAGCGCGCGCCGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Cytoplasmic Protein; Von Willebrand Factor Type A(VWA) Domain Protein; VWA Containing CoxE-Like Family Protein

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSALPSEAFDLP
LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRT
AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG
GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP
GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGQRMYPLTLAGLETAMRALSK

Sequences:

>Translated_391_residues
MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSALPSEAFDLP
LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRT
AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG
GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP
GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGQRMYPLTLAGLETAMRALSK
>Mature_391_residues
MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSALPSEAFDLP
LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRT
AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG
GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP
GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGQRMYPLTLAGLETAMRALSK

Specific function: Unknown

COG id: COG3825

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44845; Mature: 44845

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQ
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFGAYFHGVSALPSEAFDLPLDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQ
HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
KERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRTAVKVWEARAYRDYDDSVEIG
HHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEHHHHHCCCCCCHHHC
TRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECC
GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
DYKLIFVGDATMSPYEVLQPGGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYR
CEEEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
QSVAVIRDLLGQRMYPLTLAGLETAMRALSK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQ
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AFGAYFHGVSALPSEAFDLPLDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQ
HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH
KERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRTAVKVWEARAYRDYDDSVEIG
HHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEHHHHHCCCCCCHHHC
TRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECC
GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
DYKLIFVGDATMSPYEVLQPGGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYR
CEEEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
QSVAVIRDLLGQRMYPLTLAGLETAMRALSK
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA