| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352423
Identifier: 115352423
GI number: 115352423
Start: 2617503
End: 2618678
Strand: Direct
Name: 115352423
Synonym: Bamb_2372
Alternate gene names: NA
Gene position: 2617503-2618678 (Clockwise)
Preceding gene: 115352422
Following gene: 115352424
Centisome position: 73.6
GC content: 65.56
Gene sequence:
>1176_bases ATGCTGCTCAATTTCTTCTACGCGCTGCGCGCAGCCAAGCTGCCCGTCTCGGTGAAGGAATACCTGACGCTGCTCGAATC GCTGAAGGCCGGGCTGATCTCGCCGTCGATCGACGCGTTCTACTTCCTCGCGCGCATGACGCTCGTCAAGGACGAGCAGT ACTTCGACAAGTTCGACCAGGCGTTCGGCGCGTATTTCCACGGCGTGTCCGCGTTGCCGTCCGAAGCATTCGACCTGCCG CTCGACTGGCTCGAGAAGCGTCTCGAACGCGAGCTGTCGCCGGAGGAAAAGGCGCAGATCGACGCGATGGGCGGGCTCGA CAAGCTGATGGAGCGCCTGAAGGAACTGCTCGACGAGCAGAAGGAACGCCACGAAGGCGGCAACAAGTGGATCGGCACGG GCGGCACGTCGCCGTTCGGGCACGGCGGCTACAACCCCGAAGGCATGCGCATCGGCGGCCCGTCGAACGGCAACCGCACG GCGGTCAAGGTGTGGGAGGCGCGCGCGTACCGCGACTACGACGATTCGGTCGAGATCGGCACGCGCAACATCAAGGTCGC GCTGCGGCGCCTGCGCCGCTTCGCGCGCGAAGGCGCGGCCGAGGAGCTCGACCTGCCCGGCACGATCCGCAGCACGGCCG CGAATGCCGGCTGGCTCGACCTGCGGATGGTGCCCGAGCGTCACAACAACGTGAAGGTGCTGATGCTGCTCGACGTCGGC GGCTCGATGGACGACCACATCAAGCGCACCGAGGAGCTGTTCTCCGCCGCGAAGGCCGAGTTCAAGCACCTGGAGTTCTA CTACTTCCACAACTGCGTGTACGACCACCTGTGGAAGAACAACCGCCGCCGTCATTCGGAGCGCACCGCGACGTGGGACG TGCTGCACAAGTTCACGCCCGACTACAAGCTGATCTTCGTCGGCGACGCGACGATGAGCCCGTACGAAGTGCTGCAGCCC GGCGGCTCGGTCGAATACAACAACCCGGAAGCCGGCGCCGTCTGGTTGCGCCGCCTCGCCGACCAGTTCCCCCACCATGC ATGGCTGAACCCCGAGCCCGAGCGGCTATGGGAATACCGGCAATCGGTCGCGGTGATCCGCGACCTGCTCGGCCAGCGCA TGTATCCGCTCACGCTCGCGGGCCTCGAAACCGCGATGCGCGCGCTCAGCAAGTAA
Upstream 100 bases:
>100_bases CGCGGGCGCGCTGCTGAAGAACGAGCAGGATCTGAGCCTGCTCGAGCGGCTCGTCTACATGAACCGGCACAACCGGTAAC CCACCCGCGAAGGCCCGGCC
Downstream 100 bases:
>100_bases CGAACCCAACCCGCAGACACGAAGGCCGCGTCCGAGCGGCCCTCCCCCCCGGAGATAGCATGAATCCTTCGCCCACCGCG AGCGCAGCGCGCGCCGGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: Cytoplasmic Protein; Von Willebrand Factor Type A(VWA) Domain Protein; VWA Containing CoxE-Like Family Protein
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSALPSEAFDLP LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGQRMYPLTLAGLETAMRALSK
Sequences:
>Translated_391_residues MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSALPSEAFDLP LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGQRMYPLTLAGLETAMRALSK >Mature_391_residues MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQAFGAYFHGVSALPSEAFDLP LDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQKERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRT AVKVWEARAYRDYDDSVEIGTRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTPDYKLIFVGDATMSPYEVLQP GGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYRQSVAVIRDLLGQRMYPLTLAGLETAMRALSK
Specific function: Unknown
COG id: COG3825
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44845; Mature: 44845
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQ CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AFGAYFHGVSALPSEAFDLPLDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQ HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH KERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRTAVKVWEARAYRDYDDSVEIG HHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEHHHHHCCCCCCHHHC TRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECC GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC DYKLIFVGDATMSPYEVLQPGGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYR CEEEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH QSVAVIRDLLGQRMYPLTLAGLETAMRALSK HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MLLNFFYALRAAKLPVSVKEYLTLLESLKAGLISPSIDAFYFLARMTLVKDEQYFDKFDQ CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH AFGAYFHGVSALPSEAFDLPLDWLEKRLERELSPEEKAQIDAMGGLDKLMERLKELLDEQ HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHH KERHEGGNKWIGTGGTSPFGHGGYNPEGMRIGGPSNGNRTAVKVWEARAYRDYDDSVEIG HHHHCCCCEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEEHHHHHCCCCCCHHHC TRNIKVALRRLRRFAREGAAEELDLPGTIRSTAANAGWLDLRMVPERHNNVKVLMLLDVG HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCEEEEEEEECC GSMDDHIKRTEELFSAAKAEFKHLEFYYFHNCVYDHLWKNNRRRHSERTATWDVLHKFTP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC DYKLIFVGDATMSPYEVLQPGGSVEYNNPEAGAVWLRRLADQFPHHAWLNPEPERLWEYR CEEEEEEECCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH QSVAVIRDLLGQRMYPLTLAGLETAMRALSK HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA