| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352313
Identifier: 115352313
GI number: 115352313
Start: 2499655
End: 2500152
Strand: Direct
Name: 115352313
Synonym: Bamb_2262
Alternate gene names: NA
Gene position: 2499655-2500152 (Clockwise)
Preceding gene: 115352310
Following gene: 115352314
Centisome position: 70.28
GC content: 69.88
Gene sequence:
>498_bases ATGACCCGCTCCTCCGCCCCGCATGCCGCACATCGCGTCGTGCTCGACTCGAACGTCTGGATCGACATACTCGTATTCGA CGACCCTGCCACACGCCCGATCCGGGCTGCGCTCGAACGCGGCACGCTGGCCGCCGTGATCGACGGCCGCTGCCTGAACG AACTCGAGCTCGTGCTCGACTACCCGCAGTTCCGCGAGCGCGCGATCGACAAGGCCGAAGCGCTCGCGACCGTCGCACGC CTGACGAGCCGCGTCGAGCCGCCGCCCGTCGACGCCGACGCGCCGCCGTTGCCGAAGTGCAAGGACCGCGACGATCAGAA GTTTCTCGAACTCGCGCGCGCCGCGCAGGCCGATTGGCTCGTGTCGAAGGACCGTGCGCTGCTCAAGCTCGCGAAGCGCA CCGCACGCGACTTCGGCTTCCGGATCGCGCAGCCCGCGCCGTTTACCGAAGCCTGCGCGCTCGATGCCGCGTCGGCCATC CCCACCACGCCGGCCTGA
Upstream 100 bases:
>100_bases TATCGTAGTCGAGGGATTTGGCAGGAGAGAGAACGATTATCATAGAGGCTCGCTGGCACGCCGTGCCTTGCGGTCAGACG AAAACCACCGATTGTAACGA
Downstream 100 bases:
>100_bases CGGGCCGACGCAACACGCTGCGACCGTATCGATGAACGCTCCTTCCGACATGCCTACGAATCCCGTTTTCCCATCGCGCC TGCCGACCGTCGGCACCACG
Product: hypothetical protein
Products: NA
Alternate protein names: PilT Protein Domain Protein; PIN Domain
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MTRSSAPHAAHRVVLDSNVWIDILVFDDPATRPIRAALERGTLAAVIDGRCLNELELVLDYPQFRERAIDKAEALATVAR LTSRVEPPPVDADAPPLPKCKDRDDQKFLELARAAQADWLVSKDRALLKLAKRTARDFGFRIAQPAPFTEACALDAASAI PTTPA
Sequences:
>Translated_165_residues MTRSSAPHAAHRVVLDSNVWIDILVFDDPATRPIRAALERGTLAAVIDGRCLNELELVLDYPQFRERAIDKAEALATVAR LTSRVEPPPVDADAPPLPKCKDRDDQKFLELARAAQADWLVSKDRALLKLAKRTARDFGFRIAQPAPFTEACALDAASAI PTTPA >Mature_164_residues TRSSAPHAAHRVVLDSNVWIDILVFDDPATRPIRAALERGTLAAVIDGRCLNELELVLDYPQFRERAIDKAEALATVARL TSRVEPPPVDADAPPLPKCKDRDDQKFLELARAAQADWLVSKDRALLKLAKRTARDFGFRIAQPAPFTEACALDAASAIP TTPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18079; Mature: 17948
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRSSAPHAAHRVVLDSNVWIDILVFDDPATRPIRAALERGTLAAVIDGRCLNELELVLD CCCCCCCHHHEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHC YPQFRERAIDKAEALATVARLTSRVEPPPVDADAPPLPKCKDRDDQKFLELARAAQADWL CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH VSKDRALLKLAKRTARDFGFRIAQPAPFTEACALDAASAIPTTPA HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure TRSSAPHAAHRVVLDSNVWIDILVFDDPATRPIRAALERGTLAAVIDGRCLNELELVLD CCCCCCHHHEEEEECCCCEEEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHC YPQFRERAIDKAEALATVARLTSRVEPPPVDADAPPLPKCKDRDDQKFLELARAAQADWL CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH VSKDRALLKLAKRTARDFGFRIAQPAPFTEACALDAASAIPTTPA HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA