Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352310

Identifier: 115352310

GI number: 115352310

Start: 2496824

End: 2497441

Strand: Direct

Name: 115352310

Synonym: Bamb_2259

Alternate gene names: NA

Gene position: 2496824-2497441 (Clockwise)

Preceding gene: 115352309

Following gene: 115352313

Centisome position: 70.2

GC content: 62.3

Gene sequence:

>618_bases
ATGGACAGCTCTCCTGCCTCGCTCCGGATTTTCCGGGCGCTCGGCAAGCTGGCAGCCTGTGTCGCCGGCCTGTCGCTTGC
GCTTCCGGCACCGGTATTCGCCGACCTCCTCGACCAGCGCTCCGAACTAATCAACAAATTCGTCAACGAGATGCATGCCG
ATCCGATCGTCGCCGATTGTGCGGCGCACGGTAGCTTCATCGCCAGCACGTCGTCGGCCTTCGATCGCGTCGACTTCGCG
CCGAAGGCGTTCGAAAGCGGCAACGCGGCGATCACGCCGTGGAACGATTCGTTCGATCAGGGCAAGCAGCGCGTAAAGGT
GGACAACATCGTCACCGTCGACGGCCTCGGCATCCATAGCGACGGCAGCGACCCGACGCCGCTGAAATTCCGCTGCGGCT
ATGTCGGTCAGCAAATGCTTGCGTTCAGCTGGAACGATCCGGTGCCGCCGCTGAAGCCGCGCGTCGAGCGCCCGTCGTCG
TCGACGAAGAAGTTCACGGGCAAGTCGCACCGCGGCAAGGTCAAGGCAACGAGCCGCACCGGCAAGAAAGCCGCCGCAAC
GAAGAAATCAAGCGGCCAGAAGAAAGTCGTGAAGAAGAAAACCGCGAAGAAGTCCTGA

Upstream 100 bases:

>100_bases
CCTACTGCCGCCCAACTTTTTTACGCTAAGATTGAACTCCTGTTCTTCATCGGGCATCTATACCTGCCCGATGCCTCATT
CGCTCCTCACCAATAACCAG

Downstream 100 bases:

>100_bases
TCGGACGGTAGCGGCAACGACAGAAGCGAAAAAGCCGGCGCATCGCACGATGCGCCGGCTTTCTTCATGTCGACGGCGAT
GCGCTTACGCGAACGTGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MDSSPASLRIFRALGKLAACVAGLSLALPAPVFADLLDQRSELINKFVNEMHADPIVADCAAHGSFIASTSSAFDRVDFA
PKAFESGNAAITPWNDSFDQGKQRVKVDNIVTVDGLGIHSDGSDPTPLKFRCGYVGQQMLAFSWNDPVPPLKPRVERPSS
STKKFTGKSHRGKVKATSRTGKKAAATKKSSGQKKVVKKKTAKKS

Sequences:

>Translated_205_residues
MDSSPASLRIFRALGKLAACVAGLSLALPAPVFADLLDQRSELINKFVNEMHADPIVADCAAHGSFIASTSSAFDRVDFA
PKAFESGNAAITPWNDSFDQGKQRVKVDNIVTVDGLGIHSDGSDPTPLKFRCGYVGQQMLAFSWNDPVPPLKPRVERPSS
STKKFTGKSHRGKVKATSRTGKKAAATKKSSGQKKVVKKKTAKKS
>Mature_205_residues
MDSSPASLRIFRALGKLAACVAGLSLALPAPVFADLLDQRSELINKFVNEMHADPIVADCAAHGSFIASTSSAFDRVDFA
PKAFESGNAAITPWNDSFDQGKQRVKVDNIVTVDGLGIHSDGSDPTPLKFRCGYVGQQMLAFSWNDPVPPLKPRVERPSS
STKKFTGKSHRGKVKATSRTGKKAAATKKSSGQKKVVKKKTAKKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21959; Mature: 21959

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSPASLRIFRALGKLAACVAGLSLALPAPVFADLLDQRSELINKFVNEMHADPIVADC
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AAHGSFIASTSSAFDRVDFAPKAFESGNAAITPWNDSFDQGKQRVKVDNIVTVDGLGIHS
HHCCCCHHCCHHHHHHHCCCCHHHCCCCEEEECCCCCHHHHHHEEECCCEEEECCCEECC
DGSDPTPLKFRCGYVGQQMLAFSWNDPVPPLKPRVERPSSSTKKFTGKSHRGKVKATSRT
CCCCCCCEEEECCHHCCHHEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEECCCC
GKKAAATKKSSGQKKVVKKKTAKKS
CCHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MDSSPASLRIFRALGKLAACVAGLSLALPAPVFADLLDQRSELINKFVNEMHADPIVADC
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
AAHGSFIASTSSAFDRVDFAPKAFESGNAAITPWNDSFDQGKQRVKVDNIVTVDGLGIHS
HHCCCCHHCCHHHHHHHCCCCHHHCCCCEEEECCCCCHHHHHHEEECCCEEEECCCEECC
DGSDPTPLKFRCGYVGQQMLAFSWNDPVPPLKPRVERPSSSTKKFTGKSHRGKVKATSRT
CCCCCCCEEEECCHHCCHHEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEECCCC
GKKAAATKKSSGQKKVVKKKTAKKS
CCHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA