| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is murI [H]
Identifier: 115352286
GI number: 115352286
Start: 2469336
End: 2470199
Strand: Direct
Name: murI [H]
Synonym: Bamb_2235
Alternate gene names: 115352286
Gene position: 2469336-2470199 (Clockwise)
Preceding gene: 115352285
Following gene: 115352287
Centisome position: 69.43
GC content: 70.49
Gene sequence:
>864_bases ATGACGATGACGCACCAGCCAGCCGCTTCCGGGGCCCGCCCCGCCGGCCCCGTCGGGCTCTTCGATTCGGGGCTCGGCGG CCTGTCGGTGCTGCGCGCCGTGCGCGCGCACCTGCCCGGCGAGTCGTTCGTCTACGTCGCCGATTCGCAGCACGCGCCGT ACGGGCCGCGCGACGAGGCGTTCATTACGGAACGCACGCTGGCCATCGGCGAGTGGCTCGCCCGCGAAGGGGCGAAAGCG CTCGTGATCGCGTGCAACACGGCAACGGCGCGAGCGATCGCGGCGATCCGCGAACGCCTGTCGATACCTCTGGTCGGTGT CGAACCGGGCATCAAACCGGCCGCCGCGCTGTCCACGACCGGCGTCGCGGGCGTCCTCGCGACGCAATCGACGCTGAACA GTCCGCGCTTCCAGGCGCTGCTCGACCGCTACGGCGCCGGCCGCCGCTTCATCTGCCAGCCGGGCCACGGGCTCGTCGAA GCGATCGAACGCGGCGACACGAACTCCCCCGCATTGCGCACGTTGCTCGAGCGTTATCTGCAGCCAATGCTCGACGACGG TGCCGATACGCTGGTGCTCGGCTGCACGCACTATCCGTTCTTCACAGAAACGATTCGTGACATTGTTGGCGACCGCCTGA CGATCGTCGACACGAGCGATGCCATCGCCCGCCAGCTCGCGCGGGTGCTCGACGAACGCGGCCTGCGCGCGCCGGCCGGC ACGCGTGCCGCGCCGCCGCGCTTTTGCTCGACGGGCGACGGCCGGCAATTGCACGCACTCGCGTCGACGCTGCTTGGCCT CGACGCGCCCGTCGAATCCGTCACCATTTCCTCGCCGAACGCGCGCGCCTGCGCGACCGCCTGA
Upstream 100 bases:
>100_bases GGCAAGGTCGGCCTGCAGAACTACCAGCAGACGATGATGGGTTCGCCCGAGTAAGCGCCATCACGGCCACCACCGCCACG CCCGCCACCTCGCCGTCCGC
Downstream 100 bases:
>100_bases CGCGCGCCGGCGCACCGCCGGCACGCCCTCTCCTGCTATCCCGCCGTTTGAAGGGTCCGATGACCTTAAAAAAAGCCGAA CCCAGGCTTGTCAACCTCCG
Product: glutamate racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MTMTHQPAASGARPAGPVGLFDSGLGGLSVLRAVRAHLPGESFVYVADSQHAPYGPRDEAFITERTLAIGEWLAREGAKA LVIACNTATARAIAAIRERLSIPLVGVEPGIKPAAALSTTGVAGVLATQSTLNSPRFQALLDRYGAGRRFICQPGHGLVE AIERGDTNSPALRTLLERYLQPMLDDGADTLVLGCTHYPFFTETIRDIVGDRLTIVDTSDAIARQLARVLDERGLRAPAG TRAAPPRFCSTGDGRQLHALASTLLGLDAPVESVTISSPNARACATA
Sequences:
>Translated_287_residues MTMTHQPAASGARPAGPVGLFDSGLGGLSVLRAVRAHLPGESFVYVADSQHAPYGPRDEAFITERTLAIGEWLAREGAKA LVIACNTATARAIAAIRERLSIPLVGVEPGIKPAAALSTTGVAGVLATQSTLNSPRFQALLDRYGAGRRFICQPGHGLVE AIERGDTNSPALRTLLERYLQPMLDDGADTLVLGCTHYPFFTETIRDIVGDRLTIVDTSDAIARQLARVLDERGLRAPAG TRAAPPRFCSTGDGRQLHALASTLLGLDAPVESVTISSPNARACATA >Mature_286_residues TMTHQPAASGARPAGPVGLFDSGLGGLSVLRAVRAHLPGESFVYVADSQHAPYGPRDEAFITERTLAIGEWLAREGAKAL VIACNTATARAIAAIRERLSIPLVGVEPGIKPAAALSTTGVAGVLATQSTLNSPRFQALLDRYGAGRRFICQPGHGLVEA IERGDTNSPALRTLLERYLQPMLDDGADTLVLGCTHYPFFTETIRDIVGDRLTIVDTSDAIARQLARVLDERGLRAPAGT RAAPPRFCSTGDGRQLHALASTLLGLDAPVESVTISSPNARACATA
Specific function: Provides the (R)-glutamate required for cell wall biosynthesis [H]
COG id: COG0796
COG function: function code M; Glutamate racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate/glutamate racemases family [H]
Homologues:
Organism=Escherichia coli, GI87082355, Length=232, Percent_Identity=36.6379310344828, Blast_Score=133, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015942 - InterPro: IPR001920 - InterPro: IPR018187 - InterPro: IPR004391 [H]
Pfam domain/function: PF01177 Asp_Glu_race [H]
EC number: =5.1.1.3 [H]
Molecular weight: Translated: 30185; Mature: 30054
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS00923 ASP_GLU_RACEMASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMTHQPAASGARPAGPVGLFDSGLGGLSVLRAVRAHLPGESFVYVADSQHAPYGPRDEA CCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCH FITERTLAIGEWLAREGAKALVIACNTATARAIAAIRERLSIPLVGVEPGIKPAAALSTT HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHC GVAGVLATQSTLNSPRFQALLDRYGAGRRFICQPGHGLVEAIERGDTNSPALRTLLERYL CHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHH QPMLDDGADTLVLGCTHYPFFTETIRDIVGDRLTIVDTSDAIARQLARVLDERGLRAPAG HHHHCCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHCCCCCCCC TRAAPPRFCSTGDGRQLHALASTLLGLDAPVESVTISSPNARACATA CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC >Mature Secondary Structure TMTHQPAASGARPAGPVGLFDSGLGGLSVLRAVRAHLPGESFVYVADSQHAPYGPRDEA CCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCH FITERTLAIGEWLAREGAKALVIACNTATARAIAAIRERLSIPLVGVEPGIKPAAALSTT HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHC GVAGVLATQSTLNSPRFQALLDRYGAGRRFICQPGHGLVEAIERGDTNSPALRTLLERYL CHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHH QPMLDDGADTLVLGCTHYPFFTETIRDIVGDRLTIVDTSDAIARQLARVLDERGLRAPAG HHHHCCCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHCCCCCCCC TRAAPPRFCSTGDGRQLHALASTLLGLDAPVESVTISSPNARACATA CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA