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The map label for this gene is dapD

Identifier: 115352113

GI number: 115352113

Start: 2263687

End: 2264514

Strand: Direct

Name: dapD

Synonym: Bamb_2062

Alternate gene names: 115352113

Gene position: 2263687-2264514 (Clockwise)

Preceding gene: 115352112

Following gene: 115352114

Centisome position: 63.65

GC content: 65.46

Gene sequence:

>828_bases
ATGTCGCAACAACTTCAGCAAATCATCGATACCGCCTGGGAAAACCGCGCCGAGCTGTCGCCGAAGGCCGCGCCCGCCGA
CGTCCGCGAAGCCGTCGCTCATGCGCTCGAGCAACTCGATAAGGGCGCACTGCGCGTCGCCGAGAAGATCGACGGCAACT
GGACCGTGCACCAGTGGCTGAAGAAGGCCGTGCTGCTGTCGTTCCGCCTGGAGGACAACGCGCCGATGCCTGCCGGCGGC
TACTCGCAGTTCTACGACAAGGTGCCGTCGAAGTTCGCGAACTACACCGCTGAAGACTTCGCCGCGGGCGGCTTCCGCGT
CGTGCCGCCGGCCATCGCGCGCCGCGGCTCGTTCATCGCGAAGAACGTCGTGCTGATGCCGTCGTACACCAACATCGGCG
CGTACGTCGACGAAGGCACGATGGTCGACACGTGGGCCACGGTCGGTTCGTGCGCGCAGATCGGCAAGAACGTGCACCTG
TCGGGCGGCGTCGGCATCGGCGGCGTGCTCGAACCGCTGCAGGCGAACCCCGTCATCATCGAAGACAACTGCTTCATCGG
CGCGCGCTCGGAAGTCGTCGAAGGCGTGATCGTCGAGGAGAACTCGGTGATCTCGATGGGCGTGTACCTCGGCCAGAGCA
CCAAGATCTACGATCGCGAAACGGGCGAAGTCAGCTACGGCCGCATCCCGGCCGGCTCGGTCGTCGTGGCCGGCAACCTG
CCGTCGAAGGACGGCTCGCACAGCCTGTACTGCGCGGTGATCGTGAAGAAAGTCGACGCGAAGACCCGCGCGAAGGTCGG
CCTGAACGAGCTGCTGCGAGGCGACTGA

Upstream 100 bases:

>100_bases
ATGCGTCGAGGGCGCGCAACGCATCGTCGATTTCTGCCAAGCTCTCGCGCGGTAAGACGTCCATCCCGATCAATTCCATT
CCTCTCCTGCGAAAACGAAC

Downstream 100 bases:

>100_bases
TGGCCAAGCCGCACACCGTGGTCGTCTACGGCATTCCGAACTGCGACACCGTGAAGAAGGCCCGCGTGTGGCTCGACGAT
CACGGCGTCGAGTTCGAGTT

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MSQQLQQIIDTAWENRAELSPKAAPADVREAVAHALEQLDKGALRVAEKIDGNWTVHQWLKKAVLLSFRLEDNAPMPAGG
YSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHL
SGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNL
PSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD

Sequences:

>Translated_275_residues
MSQQLQQIIDTAWENRAELSPKAAPADVREAVAHALEQLDKGALRVAEKIDGNWTVHQWLKKAVLLSFRLEDNAPMPAGG
YSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHL
SGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNL
PSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD
>Mature_274_residues
SQQLQQIIDTAWENRAELSPKAAPADVREAVAHALEQLDKGALRVAEKIDGNWTVHQWLKKAVLLSFRLEDNAPMPAGGY
SQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIAKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLS
GGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNLP
SKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=77.1217712177122, Blast_Score=409, Evalue=1e-115,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29480; Mature: 29349

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQLQQIIDTAWENRAELSPKAAPADVREAVAHALEQLDKGALRVAEKIDGNWTVHQWL
CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
KKAVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIA
HHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEECCHHHHHCCCEEE
KNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVII
CCEEEECCCCCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHCCCCCCCCEEE
EDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNL
ECCCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCCEECCCCCCCCEEEECCC
PSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD
CCCCCCCCEEEEEEEHHHCCHHHHHHCHHHHHCCC
>Mature Secondary Structure 
SQQLQQIIDTAWENRAELSPKAAPADVREAVAHALEQLDKGALRVAEKIDGNWTVHQWL
CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
KKAVLLSFRLEDNAPMPAGGYSQFYDKVPSKFANYTAEDFAAGGFRVVPPAIARRGSFIA
HHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCEEECCHHHHHCCCEEE
KNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVII
CCEEEECCCCCCCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHCCCCCCCCEEE
EDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVSYGRIPAGSVVVAGNL
ECCCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCCEECCCCCCCCEEEECCC
PSKDGSHSLYCAVIVKKVDAKTRAKVGLNELLRGD
CCCCCCCCEEEEEEEHHHCCHHHHHHCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA