| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is glnD [H]
Identifier: 115352105
GI number: 115352105
Start: 2248692
End: 2251268
Strand: Direct
Name: glnD [H]
Synonym: Bamb_2054
Alternate gene names: 115352105
Gene position: 2248692-2251268 (Clockwise)
Preceding gene: 115352104
Following gene: 115352106
Centisome position: 63.23
GC content: 67.64
Gene sequence:
>2577_bases ATGAGCGCTCACGCCGCCCCCTCGCCCGAAGCGCTGTCGCGGCGCGCCGAATTCAAGGCCGCCAAGGTCGACATGCTCGA GCGCTTTCGCAGCGCGGCGAACGTCGCGTCGCTGATGCACGCGCTGTCGAAGCTCACCGACGACGCGCTCAAGCGTGTAT GGGACGACTGCGGATTGCCCGCGACGCTCGCGCTCATCGCCGTGGGCGGCTACGGACGCGGCGAGCTCGCGCCCTACTCC GACGTCGACATCCTCGTGCTGCTGCCCGACGCGCACGACCCGGCGCTCGACGCGCGCATCGAGCGCTTCATCGGGATGGC GTGGGATCTCGGCCTCGAGATCGGCAGCAGCGTGCGCACGGTCGCGCAATGCATCGAGGAAGCATCGCAGGACGTCACCG TGCAGACCTCGCTGCTCGAGGCGCGCCGCATCGTCGGCAGCACCGCGCTGTTCGAGCGCTTCACGGTACGGTATCACGAG GCGCTCGACGCCCGCGCGTTCTTCACCGCGAAGGTGCTCGAGATGCGCCAGCGCCACGCGAAGTTCCAGGACACGCCGTA CAGCCTCGAGCCGAACGTGAAGGAAAGCCCAGGCGGCCTGCGCGACCTGCAGACGATCCTGTGGATCGCGCGCGCGGCGG CCTTCGGCAGCAGCTGGCGCGAGCTCGACACACGCGGGCTCATCACCGAGCGCGAGGCGCGCGAGCTGCGCCGCAACGAA GGATTCCTGAAGACGCTGCGCGCGCGGCTGCACGTGATCGCCGGCCGTCGCCAGGACATGCTCGTGTTCGACCTGCAGAC GCAGGCCGCCGAGAGCTTCGGCTACCGGCCGACGCAGGCCAAGCGCGCGAGCGAGCAGCTGATGCGCCGCTACTACTGGG CCGCGAAGGCGGTCACGCAGCTCGCGACGATCCTGATCCAGAACATCGAGGCGCAGCTGTTCCCCGCGACGAGCGGCATC ACGCGCGTGCTGTCGCCCGATCGTTTCGTCGAGAAGCAGGGCATGCTCGAGATCGTCGACGACGGCGTGTTCGAACGCCA TCCCGACGCGATCCTCGAAGCCTTCCTGCTGTACGAGGTGACCCGCGGCGTGAAGGGCCTGTCCGCCCGCACGCTGCGCG CGCTTTACAACTCGCGCGAGATCATGAACAACACGTGGCGGCGCGATCCGCAGAACCGCCGCACGTTCATGCAGATCCTG CAGCAGCCCGAAGGCATCACGCATGCATTCCGGCTGATGAACCAGACGAGCGTGCTCGGCCGCTATCTGCTGAATTTCCG CCGCATCGTCGGCCAGATGCAGCACGACCTGTACCACGTGTATACGGTCGACCAGCATATCCTGATGGTGTTGCGCAACC TCCGCCGCTTCGCGGTGGCCGAGCATGCGCACGAATACCCGTTCTGCAGCCAGCTGATCGGCAATTTCGAGCGCCCGTGG GTGCTGTATGTCGCCGCGCTGTTCCACGACATCGCGAAAGGCCGCGGCGGCGACCATTCGACGCTCGGGATGGCCGACGC GCGGCGCTTCTGCCGCGAGCACGGCATCACCGGCGACGACGCGGCGCTGATCGTATGGCTCGTCCAGCATCACCTGACGA TGAGCCAGGTCGCGCAGAAGCAGGACACGAGCGACCCGGAGGTCATCAAGCGCTTCGCGGAAGTCGTCGGCAACGAACGC TACCTCACCGCGCTCTACCTGCTGACCGTCGCCGATATCCGCGGCACGAGCCCGAAGGTGTGGAACACGTGGAAGGGCAA GCTGCTCGAGGATCTCTACCGCATCACGCTCGCGGTGCTCGGCGGCGCCAACCCCGATGCGCATTCGGAACTGAAGTCGC GCCAGGAGCAGGCGCTCGCGCTGCTGCGCCTCGAGACCGTGCCCGACGACGCGCACCGCGCGCTGTGGGATCAGCTCGAC GTCGGCTTCTTCCTGCGTCACGACGCGGCCGACATCGCATGGCAGACGCGCGTGCTGTACCGGCACGTGAACGCCGAGAC GGCGATCGTCCGCGCGCGGCCGTCGCCGATCGGCGACGCGCTGCAGGTGCTCGTGTACGTGAAGGACCGCCCCGACCTGT TCGCGGGCATCTGCGCGTACTTCGACCGCAACGGACTCTCCGTGCTCGATGCGCGCGTCAGCACCACGCGGCATGGCTAT GCGCTCGACAATTTCATCGTCACGCAGACCGAACGCGACGTGCGCTATCGCGACATCGCGAATCTCGTCGAACAGCAGCT CGCGACGCGCCTTGCCGAGACCGCGCCGCTGCCGGAGCCGTCCAAGGGCCGCCTGTCGCGGCTGTCCCGGACGTTTCCGA TCACGCCGCGCGTCGACCTCCGGGCCGACGAGCGCGGTCAGTACTACATCCTGTCCGTGTCCGCCAACGACCGGCCGGGC CTTCTCTATTCGATCGCGCGCGTACTGGCCGAGCATCAGGTCGGCGTCCACGCGGCGCGGATCAATACGCTCGGCGAACG CGTCGAGGACATCTTCCTGCTCGATGGTGCCGGCCTGTCCGACAACCGCCTGCAGATCCAGCTCGAAACCGAATTGCTGC GCGCGATCGCAGTCTGA
Upstream 100 bases:
>100_bases CGGCACGCCGGCACGCCCGGTGTTCGCGCAACCGGCCGCCGCGGTCTGAGCGCCGTCGCGCCCGCCCGCCTGCCCCCGCC CCCGACCTGAACGGCCACCC
Downstream 100 bases:
>100_bases ATGAATCCCAGCGTTTATGCGCACCAAATTAACCGTCAAGAATCCGCGTCCGGCGTCGCCGACCCGCGCACCCGTCCGCT CCGGCAGCCTCGTCGCTCGC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 858; Mature: 857
Protein sequence:
>858_residues MSAHAAPSPEALSRRAEFKAAKVDMLERFRSAANVASLMHALSKLTDDALKRVWDDCGLPATLALIAVGGYGRGELAPYS DVDILVLLPDAHDPALDARIERFIGMAWDLGLEIGSSVRTVAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHE ALDARAFFTAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAAFGSSWRELDTRGLITEREARELRRNE GFLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYRPTQAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGI TRVLSPDRFVEKQGMLEIVDDGVFERHPDAILEAFLLYEVTRGVKGLSARTLRALYNSREIMNNTWRRDPQNRRTFMQIL QQPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNLRRFAVAEHAHEYPFCSQLIGNFERPW VLYVAALFHDIAKGRGGDHSTLGMADARRFCREHGITGDDAALIVWLVQHHLTMSQVAQKQDTSDPEVIKRFAEVVGNER YLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVLGGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLD VGFFLRHDAADIAWQTRVLYRHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGY ALDNFIVTQTERDVRYRDIANLVEQQLATRLAETAPLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPG LLYSIARVLAEHQVGVHAARINTLGERVEDIFLLDGAGLSDNRLQIQLETELLRAIAV
Sequences:
>Translated_858_residues MSAHAAPSPEALSRRAEFKAAKVDMLERFRSAANVASLMHALSKLTDDALKRVWDDCGLPATLALIAVGGYGRGELAPYS DVDILVLLPDAHDPALDARIERFIGMAWDLGLEIGSSVRTVAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHE ALDARAFFTAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAAFGSSWRELDTRGLITEREARELRRNE GFLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYRPTQAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGI TRVLSPDRFVEKQGMLEIVDDGVFERHPDAILEAFLLYEVTRGVKGLSARTLRALYNSREIMNNTWRRDPQNRRTFMQIL QQPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNLRRFAVAEHAHEYPFCSQLIGNFERPW VLYVAALFHDIAKGRGGDHSTLGMADARRFCREHGITGDDAALIVWLVQHHLTMSQVAQKQDTSDPEVIKRFAEVVGNER YLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVLGGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLD VGFFLRHDAADIAWQTRVLYRHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGY ALDNFIVTQTERDVRYRDIANLVEQQLATRLAETAPLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPG LLYSIARVLAEHQVGVHAARINTLGERVEDIFLLDGAGLSDNRLQIQLETELLRAIAV >Mature_857_residues SAHAAPSPEALSRRAEFKAAKVDMLERFRSAANVASLMHALSKLTDDALKRVWDDCGLPATLALIAVGGYGRGELAPYSD VDILVLLPDAHDPALDARIERFIGMAWDLGLEIGSSVRTVAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHEA LDARAFFTAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAAFGSSWRELDTRGLITEREARELRRNEG FLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYRPTQAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGIT RVLSPDRFVEKQGMLEIVDDGVFERHPDAILEAFLLYEVTRGVKGLSARTLRALYNSREIMNNTWRRDPQNRRTFMQILQ QPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNLRRFAVAEHAHEYPFCSQLIGNFERPWV LYVAALFHDIAKGRGGDHSTLGMADARRFCREHGITGDDAALIVWLVQHHLTMSQVAQKQDTSDPEVIKRFAEVVGNERY LTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVLGGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLDV GFFLRHDAADIAWQTRVLYRHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGYA LDNFIVTQTERDVRYRDIANLVEQQLATRLAETAPLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPGL LYSIARVLAEHQVGVHAARINTLGERVEDIFLLDGAGLSDNRLQIQLETELLRAIAV
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=854, Percent_Identity=35.5971896955504, Blast_Score=515, Evalue=1e-147,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 97066; Mature: 96935
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHAAPSPEALSRRAEFKAAKVDMLERFRSAANVASLMHALSKLTDDALKRVWDDCGLP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH ATLALIAVGGYGRGELAPYSDVDILVLLPDAHDPALDARIERFIGMAWDLGLEIGSSVRT HHHHHHEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH VAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHEALDARAFFTAKVLEMRQRHA HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KFQDTPYSLEPNVKESPGGLRDLQTILWIARAAAFGSSWRELDTRGLITEREARELRRNE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHCC GFLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYRPTQAKRASEQLMRRYYWAAKAVTQ HHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LATILIQNIEAQLFPATSGITRVLSPDRFVEKQGMLEIVDDGVFERHPDAILEAFLLYEV HHHHHHHHHHHHEEECCCCHHHHCCCHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHHH TRGVKGLSARTLRALYNSREIMNNTWRRDPQNRRTFMQILQQPEGITHAFRLMNQTSVLG HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNLRRFAVAEHAHEYPFCSQLIGNFERPW HHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHH VLYVAALFHDIAKGRGGDHSTLGMADARRFCREHGITGDDAALIVWLVQHHLTMSQVAQK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QDTSDPEVIKRFAEVVGNERYLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVL CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH GGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLDVGFFLRHDAADIAWQTRVLY CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHH RHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGY HHCCCCEEEEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCC ALDNFIVTQTERDVRYRDIANLVEQQLATRLAETAPLPEPSKGRLSRLSRTFPITPRVDL CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC RADERGQYYILSVSANDRPGLLYSIARVLAEHQVGVHAARINTLGERVEDIFLLDGAGLS CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCCC DNRLQIQLETELLRAIAV CCEEEEEEHHHHHHHHCC >Mature Secondary Structure SAHAAPSPEALSRRAEFKAAKVDMLERFRSAANVASLMHALSKLTDDALKRVWDDCGLP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH ATLALIAVGGYGRGELAPYSDVDILVLLPDAHDPALDARIERFIGMAWDLGLEIGSSVRT HHHHHHEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH VAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHEALDARAFFTAKVLEMRQRHA HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KFQDTPYSLEPNVKESPGGLRDLQTILWIARAAAFGSSWRELDTRGLITEREARELRRNE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHCC GFLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYRPTQAKRASEQLMRRYYWAAKAVTQ HHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LATILIQNIEAQLFPATSGITRVLSPDRFVEKQGMLEIVDDGVFERHPDAILEAFLLYEV HHHHHHHHHHHHEEECCCCHHHHCCCHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHHH TRGVKGLSARTLRALYNSREIMNNTWRRDPQNRRTFMQILQQPEGITHAFRLMNQTSVLG HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNLRRFAVAEHAHEYPFCSQLIGNFERPW HHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHH VLYVAALFHDIAKGRGGDHSTLGMADARRFCREHGITGDDAALIVWLVQHHLTMSQVAQK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QDTSDPEVIKRFAEVVGNERYLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVL CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH GGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLDVGFFLRHDAADIAWQTRVLY CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHH RHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGY HHCCCCEEEEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCC ALDNFIVTQTERDVRYRDIANLVEQQLATRLAETAPLPEPSKGRLSRLSRTFPITPRVDL CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCC RADERGQYYILSVSANDRPGLLYSIARVLAEHQVGVHAARINTLGERVEDIFLLDGAGLS CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHEEEECCCCCC DNRLQIQLETELLRAIAV CCEEEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA