Click here to switch to the map view.

The map label for this gene is ytbD [H]

Identifier: 115352047

GI number: 115352047

Start: 2191679

End: 2192872

Strand: Direct

Name: ytbD [H]

Synonym: Bamb_1996

Alternate gene names: 115352047

Gene position: 2191679-2192872 (Clockwise)

Preceding gene: 115352046

Following gene: 115352048

Centisome position: 61.62

GC content: 68.34

Gene sequence:

>1194_bases
ATGAACGAGCGCATGCCTTTCGTCATCTACGTCTTCGCGCTGTGCGCGTTCGCCCTGGGTTTCACCGAGTTCGTGACCAT
CGGCTTGGTGTCCACTATTTCCGCCGATCTGCATGCCAGCGTCGCCCAGGTCGGCACGGCGGTCACGGCCTATGCGCTGG
GCGCGGTGATTGGTGCGCCGGGCCTGACCGCGCTGGCCACACGCTGGCCGCGCAAGCGGTTGCTGCTGGTGGCGATGGGA
CTGTTCACGCTGGGCAACGCGGTGGTCAGCCTGTCCGATGCGCTGACGCCGATGCTGGTCGCCCGCTTTGCCTCGGGCCT
GGGGCATGGGGTGTTCCTCGCGGTGGCGTCCAGCGTCGCCACGCAACTGGCGGGCCGGCATCGGGCCGGGGCGGCAGTGG
CCGTGGTATTTGGCGGCCTGACGCTGGCCCTGGCGCTGGGCGTTCCGCTCGGCACCTACCTGGGCAGCGTGTTGAGCTGG
CAGGTCATCTTCATGGCAGTAGCCGCGAGCGGCGCGGTTGGCTTCCTGGGCCTGCTGGCCCTGATGCCGACGGATCGGGA
CGACGCCTCGGCGCAGGCCAACGCGATGGATGGCCTGAAAGCCATGTTCAATCCGCGTCTGCTGGCCGGGGCCGGCATTA
CCGTGCTGGCGTATGCGGGGTCGTTCGCGCTTTACACCTACATTTCGCCGATCCTGCTGCAGGTGACGAACGTCAGCGAG
AGCACGGCCAGCCTGCTGATGCTGGGCTACGGCGTGATGGCCGCCATCGGCAACATCTGGGGCGGACGTCTGACCGACCG
CAAGGGCGCGGACTTCGCGGTGATGACCGTACTGGTCGGCCTGGCTGTGGTGCTGTCGGCGATCTGGGCATCGGCACCGT
CGTTGCCATTGATGGTGTTGCTGACGGGCCTGCTGGGTGCGCTGACCTATGCGGCGGTGCCGGCCTTGCAGGCGCGGGTG
ATCGGGCTGTCGCACATCCACGCGCCGCAGGCGCCGGCGGTGGCGGCTGGGCTGAACATCGCCGGCTTCAATGGCGGTAT
CGCGCTGGGTTCGCTGCTGGGCGGGGCCAGCCTGGAGGCGATGGGGCTGACCAGCACGGCCTGGGTCGGTGCGGTGGCCG
TGGGCCTGGGGATCGTCTGGATGCTCTGGCAGATGCGAGGAAACTGCGCTCGACGCACCGAAGTCCCTGGATGA

Upstream 100 bases:

>100_bases
CGACAGACTGGTGACGGGCCAGAACCCCGCTTCGGCCAAGGGCGTGGCCGAAGCGATGCTGTCGCTGCTGGAAGCGGCAT
CCGTGGAGCGGGCCTAAGCC

Downstream 100 bases:

>100_bases
GGGTATAGCGATGCAGCTTCGTCAATTTCGTTTCTTTCGGACTGTAGGCGAGGAACTTCACTTCGCGCACGCGGCCGCCC
AGCGTTGGTTCCAACCGTCA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MNERMPFVIYVFALCAFALGFTEFVTIGLVSTISADLHASVAQVGTAVTAYALGAVIGAPGLTALATRWPRKRLLLVAMG
LFTLGNAVVSLSDALTPMLVARFASGLGHGVFLAVASSVATQLAGRHRAGAAVAVVFGGLTLALALGVPLGTYLGSVLSW
QVIFMAVAASGAVGFLGLLALMPTDRDDASAQANAMDGLKAMFNPRLLAGAGITVLAYAGSFALYTYISPILLQVTNVSE
STASLLMLGYGVMAAIGNIWGGRLTDRKGADFAVMTVLVGLAVVLSAIWASAPSLPLMVLLTGLLGALTYAAVPALQARV
IGLSHIHAPQAPAVAAGLNIAGFNGGIALGSLLGGASLEAMGLTSTAWVGAVAVGLGIVWMLWQMRGNCARRTEVPG

Sequences:

>Translated_397_residues
MNERMPFVIYVFALCAFALGFTEFVTIGLVSTISADLHASVAQVGTAVTAYALGAVIGAPGLTALATRWPRKRLLLVAMG
LFTLGNAVVSLSDALTPMLVARFASGLGHGVFLAVASSVATQLAGRHRAGAAVAVVFGGLTLALALGVPLGTYLGSVLSW
QVIFMAVAASGAVGFLGLLALMPTDRDDASAQANAMDGLKAMFNPRLLAGAGITVLAYAGSFALYTYISPILLQVTNVSE
STASLLMLGYGVMAAIGNIWGGRLTDRKGADFAVMTVLVGLAVVLSAIWASAPSLPLMVLLTGLLGALTYAAVPALQARV
IGLSHIHAPQAPAVAAGLNIAGFNGGIALGSLLGGASLEAMGLTSTAWVGAVAVGLGIVWMLWQMRGNCARRTEVPG
>Mature_397_residues
MNERMPFVIYVFALCAFALGFTEFVTIGLVSTISADLHASVAQVGTAVTAYALGAVIGAPGLTALATRWPRKRLLLVAMG
LFTLGNAVVSLSDALTPMLVARFASGLGHGVFLAVASSVATQLAGRHRAGAAVAVVFGGLTLALALGVPLGTYLGSVLSW
QVIFMAVAASGAVGFLGLLALMPTDRDDASAQANAMDGLKAMFNPRLLAGAGITVLAYAGSFALYTYISPILLQVTNVSE
STASLLMLGYGVMAAIGNIWGGRLTDRKGADFAVMTVLVGLAVVLSAIWASAPSLPLMVLLTGLLGALTYAAVPALQARV
IGLSHIHAPQAPAVAAGLNIAGFNGGIALGSLLGGASLEAMGLTSTAWVGAVAVGLGIVWMLWQMRGNCARRTEVPG

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=346, Percent_Identity=31.5028901734104, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1786595, Length=263, Percent_Identity=30.4182509505703, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI145693198, Length=365, Percent_Identity=25.7534246575342, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787808, Length=384, Percent_Identity=25.5208333333333, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40295; Mature: 40295

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: PS00626 RCC1_2 ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERMPFVIYVFALCAFALGFTEFVTIGLVSTISADLHASVAQVGTAVTAYALGAVIGAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GLTALATRWPRKRLLLVAMGLFTLGNAVVSLSDALTPMLVARFASGLGHGVFLAVASSVA
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TQLAGRHRAGAAVAVVFGGLTLALALGVPLGTYLGSVLSWQVIFMAVAASGAVGFLGLLA
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LMPTDRDDASAQANAMDGLKAMFNPRLLAGAGITVLAYAGSFALYTYISPILLQVTNVSE
HCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHEEHHHCHHHHHHHHHHHHHHHHCCCH
STASLLMLGYGVMAAIGNIWGGRLTDRKGADFAVMTVLVGLAVVLSAIWASAPSLPLMVL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LTGLLGALTYAAVPALQARVIGLSHIHAPQAPAVAAGLNIAGFNGGIALGSLLGGASLEA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEECCCCCHHHHHHHCCCCCHH
MGLTSTAWVGAVAVGLGIVWMLWQMRGNCARRTEVPG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNERMPFVIYVFALCAFALGFTEFVTIGLVSTISADLHASVAQVGTAVTAYALGAVIGAP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GLTALATRWPRKRLLLVAMGLFTLGNAVVSLSDALTPMLVARFASGLGHGVFLAVASSVA
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
TQLAGRHRAGAAVAVVFGGLTLALALGVPLGTYLGSVLSWQVIFMAVAASGAVGFLGLLA
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LMPTDRDDASAQANAMDGLKAMFNPRLLAGAGITVLAYAGSFALYTYISPILLQVTNVSE
HCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHEEHHHCHHHHHHHHHHHHHHHHCCCH
STASLLMLGYGVMAAIGNIWGGRLTDRKGADFAVMTVLVGLAVVLSAIWASAPSLPLMVL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
LTGLLGALTYAAVPALQARVIGLSHIHAPQAPAVAAGLNIAGFNGGIALGSLLGGASLEA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEECCCCCHHHHHHHCCCCCHH
MGLTSTAWVGAVAVGLGIVWMLWQMRGNCARRTEVPG
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]