Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115352042

Identifier: 115352042

GI number: 115352042

Start: 2188121

End: 2188681

Strand: Direct

Name: 115352042

Synonym: Bamb_1991

Alternate gene names: NA

Gene position: 2188121-2188681 (Clockwise)

Preceding gene: 115352040

Following gene: 115352043

Centisome position: 61.52

GC content: 57.93

Gene sequence:

>561_bases
ATGATCTATACCGTCGAATGCAGCTTTTCCGACCCAGCCAGCGAAGCAGAGTGGAGTGATTTCTACAGCTTGGAAAAGCT
GCCCGCCCTCATTTCAGTGAGCGGATTCCATACTTCGCAACGCTTCAAGGCGTTGAGCCCTGGCTGCCCCGTCTACCTGG
CCATGCACTCGATCGACGGTCTGGCCGTGCTTGAGAGCGATGAGTACCGCCAGAAGGGTGGCGGCAATTTCGCTCGTTGG
CAGCAGCACATCACCGATTGGCACCGCAATCTTTATGGCGGCCTTGAACGCGCGCCTGCCATCGGTGAAGGAGACCATCT
GATCGTGAGCGCAGTCGGTCCCGAGCCGCTCATCGAGATGGGGCTCAAGCCTGATCTGATGCGGGCCGTCGCATTGGAGA
AATTTCCTGAAAACAGGTGGCTGGCGAAGCTGGATAGCTCCATCAGTCTCAGTGTGGAAACCCTTCCGAAGGACGTGCAC
CTCTATGCCCCGATGACCGCGCAATTGACGAGTGGCAATGACGCAGTGCCCCAGACGCAGGGACAGAACCGACATGCCTA
A

Upstream 100 bases:

>100_bases
ATACCGAAAAATCGTTTTATGCGTCGATATCTGGGACATATCGTGATGGAACATCAACAAAGAGGGCCGGATGCACAAGA
AGTCCGGTAGCGAGTGATCC

Downstream 100 bases:

>100_bases
CCTGACGATCTTCATCCAGGCGGAAAAGATGCCGCCCGAAGCGAATCTGGCGGAACTCACCGAACGATGCACTCGGCTTT
GCACGGACGTCCTCCAGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MIYTVECSFSDPASEAEWSDFYSLEKLPALISVSGFHTSQRFKALSPGCPVYLAMHSIDGLAVLESDEYRQKGGGNFARW
QQHITDWHRNLYGGLERAPAIGEGDHLIVSAVGPEPLIEMGLKPDLMRAVALEKFPENRWLAKLDSSISLSVETLPKDVH
LYAPMTAQLTSGNDAVPQTQGQNRHA

Sequences:

>Translated_186_residues
MIYTVECSFSDPASEAEWSDFYSLEKLPALISVSGFHTSQRFKALSPGCPVYLAMHSIDGLAVLESDEYRQKGGGNFARW
QQHITDWHRNLYGGLERAPAIGEGDHLIVSAVGPEPLIEMGLKPDLMRAVALEKFPENRWLAKLDSSISLSVETLPKDVH
LYAPMTAQLTSGNDAVPQTQGQNRHA
>Mature_186_residues
MIYTVECSFSDPASEAEWSDFYSLEKLPALISVSGFHTSQRFKALSPGCPVYLAMHSIDGLAVLESDEYRQKGGGNFARW
QQHITDWHRNLYGGLERAPAIGEGDHLIVSAVGPEPLIEMGLKPDLMRAVALEKFPENRWLAKLDSSISLSVETLPKDVH
LYAPMTAQLTSGNDAVPQTQGQNRHA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20539; Mature: 20539

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYTVECSFSDPASEAEWSDFYSLEKLPALISVSGFHTSQRFKALSPGCPVYLAMHSIDG
CEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCEEEEEECCCC
LAVLESDEYRQKGGGNFARWQQHITDWHRNLYGGLERAPAIGEGDHLIVSAVGPEPLIEM
EEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEEECCCCHHHHH
GLKPDLMRAVALEKFPENRWLAKLDSSISLSVETLPKDVHLYAPMTAQLTSGNDAVPQTQ
CCCHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCCEEEECCCEEEECCCCCCCCCCC
GQNRHA
CCCCCC
>Mature Secondary Structure
MIYTVECSFSDPASEAEWSDFYSLEKLPALISVSGFHTSQRFKALSPGCPVYLAMHSIDG
CEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCEEEEEECCCC
LAVLESDEYRQKGGGNFARWQQHITDWHRNLYGGLERAPAIGEGDHLIVSAVGPEPLIEM
EEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEEECCCCHHHHH
GLKPDLMRAVALEKFPENRWLAKLDSSISLSVETLPKDVHLYAPMTAQLTSGNDAVPQTQ
CCCHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCCEEEECCCEEEECCCCCCCCCCC
GQNRHA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA