| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352038
Identifier: 115352038
GI number: 115352038
Start: 2183460
End: 2183999
Strand: Direct
Name: 115352038
Synonym: Bamb_1987
Alternate gene names: NA
Gene position: 2183460-2183999 (Clockwise)
Preceding gene: 115352037
Following gene: 115352039
Centisome position: 61.39
GC content: 68.7
Gene sequence:
>540_bases ATGAACGTATCCACTGCACCCGCCGCGAACGCGGCCACGGCTGCGCCATCGCTCGCGGTACTCGCCGGCCAGACCGGCAA CGTGCTGCTGACGCGCGTATCGCTGGCCTACATCGAACCGCGCTTCAAGCTCTACCTGCGCTTCGGCGAACCGGCGCGCA CGATTCAGCTCGACCGCTGGCGGCGCTGTGCGGTGTTCCTTCCGCACGCAATGTTCTGCCGCGTGCGCTGGCAGGCCAAC GACTACGGCACGATCCGTTGGCAGTTGATAGTGATGCAGGCCGGCACGCCGCTGGATGCCTTGCAGCGCATCCCTGGTGT GCGGCCCGGCGCGCGGCTACTGCTGCATGCCGAAGGCGACACCAACGTGCGCGCCGTGCTGGAACGCATCGACGCCATCG AGGCGCTGGGCATTGCCCCGTCTGCCGTCTCGCCCGCGTACTGGCGCACGCTGGGCAACCGTATCGCGGCGCGCTTGCCG CTGCCCGAATACACCGCCGAGCGGCACGCCGCCTGGCTCGCTGGGAAGGTTCTGCCATGA
Upstream 100 bases:
>100_bases GCATCAAGGTTTCGGCCTTCACGCGAGGCGCGACCGTGGCCGAACTTCTGCGCGCTTTGCTGGAACGGGAGTTTCCCGAA AACCGCACGGAGAACATGCC
Downstream 100 bases:
>100_bases CGATCGTTTCCACTTCATCCGCCTCGCCGCGTCCTCGCTCACGCCTGCGCGCTCGTCTCGTGCTGGCGGCCCTGACCGCC TGCGGCCTCGCTGCGCTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 179; Mature: 179
Protein sequence:
>179_residues MNVSTAPAANAATAAPSLAVLAGQTGNVLLTRVSLAYIEPRFKLYLRFGEPARTIQLDRWRRCAVFLPHAMFCRVRWQAN DYGTIRWQLIVMQAGTPLDALQRIPGVRPGARLLLHAEGDTNVRAVLERIDAIEALGIAPSAVSPAYWRTLGNRIAARLP LPEYTAERHAAWLAGKVLP
Sequences:
>Translated_179_residues MNVSTAPAANAATAAPSLAVLAGQTGNVLLTRVSLAYIEPRFKLYLRFGEPARTIQLDRWRRCAVFLPHAMFCRVRWQAN DYGTIRWQLIVMQAGTPLDALQRIPGVRPGARLLLHAEGDTNVRAVLERIDAIEALGIAPSAVSPAYWRTLGNRIAARLP LPEYTAERHAAWLAGKVLP >Mature_179_residues MNVSTAPAANAATAAPSLAVLAGQTGNVLLTRVSLAYIEPRFKLYLRFGEPARTIQLDRWRRCAVFLPHAMFCRVRWQAN DYGTIRWQLIVMQAGTPLDALQRIPGVRPGARLLLHAEGDTNVRAVLERIDAIEALGIAPSAVSPAYWRTLGNRIAARLP LPEYTAERHAAWLAGKVLP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19688; Mature: 19688
Theoretical pI: Translated: 10.93; Mature: 10.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVSTAPAANAATAAPSLAVLAGQTGNVLLTRVSLAYIEPRFKLYLRFGEPARTIQLDRW CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEHHHCCCEEEEEEEECCCCCEEECCCH RRCAVFLPHAMFCRVRWQANDYGTIRWQLIVMQAGTPLDALQRIPGVRPGARLLLHAEGD HHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHCCCCCCCCEEEEEECCC TNVRAVLERIDAIEALGIAPSAVSPAYWRTLGNRIAARLPLPEYTAERHAAWLAGKVLP CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MNVSTAPAANAATAAPSLAVLAGQTGNVLLTRVSLAYIEPRFKLYLRFGEPARTIQLDRW CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEEHHHCCCEEEEEEEECCCCCEEECCCH RRCAVFLPHAMFCRVRWQANDYGTIRWQLIVMQAGTPLDALQRIPGVRPGARLLLHAEGD HHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHCCCCCCCCEEEEEECCC TNVRAVLERIDAIEALGIAPSAVSPAYWRTLGNRIAARLPLPEYTAERHAAWLAGKVLP CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA