| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352015
Identifier: 115352015
GI number: 115352015
Start: 2160828
End: 2161415
Strand: Direct
Name: 115352015
Synonym: Bamb_1964
Alternate gene names: NA
Gene position: 2160828-2161415 (Clockwise)
Preceding gene: 115352014
Following gene: 115352024
Centisome position: 60.76
GC content: 60.37
Gene sequence:
>588_bases ATGACAGATTTAACCGCCAACGCGATTGCCTGCCTCGGATGGGGTTCCCTCGTCTGGGATCCCCGCGACTTACCCTGCCG TGGAAGCTGGCACAACGACGGGCCCTCACTGCCGGTCGAGTTTGCGCGCGAGTCAGGCGCGAAGAAGAATCAGCGAGGCG ACAAGATTACGCTGGTCGTCTGTCCCGAGAGCGCGCGTGTTAGGACCTACTGGATCTTGCTTGATGTACCTGACCTCACA GCCGCACGAAGGTGCCTGGCCGCACGCGAAGGCATTCCTAAGAACTGGGAAACCGATATCGGCTTTGCCGATTGTGCCAG TGGCCACGCGCATGGACTGGAAGCCGACACGATCACAACCTGGGGATCGGCCATCGGTCTAGCCGGCGTCGTCTGGACAA ACCTACCCTGCAAGTTCAATGGTCAGCAGGTGATGCCCAGCGAAGCCGAAGTCATAGCGTTCCTACGGGCTCTGGATGGC ACCAATCGCGCACCTGCAGAGCGATATGTCCGCCAAGCCCCGACCCAGATAGACACGCTCTACAGGCAAGCGATCGAACG GGAACTCGGGTGGCTCCCTCACGGCTAA
Upstream 100 bases:
>100_bases AGGCATCATGTCGGGATCGGTGCCACGGCTCCGTCCAGCCTGCATCGACGGCGGGCGACACTGGGCCACTGAAGCTTCGC GATAAGACAGAGATCAAAGC
Downstream 100 bases:
>100_bases GCTGACCAACAGGCGCATCCGTCAACGGCATGCCCGCTCCCTCCCCCGCCACTGCTACGTACGGTGCTCAGGCGAGTTCG GTGAGATAGGCAGATTCACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 195; Mature: 194
Protein sequence:
>195_residues MTDLTANAIACLGWGSLVWDPRDLPCRGSWHNDGPSLPVEFARESGAKKNQRGDKITLVVCPESARVRTYWILLDVPDLT AARRCLAAREGIPKNWETDIGFADCASGHAHGLEADTITTWGSAIGLAGVVWTNLPCKFNGQQVMPSEAEVIAFLRALDG TNRAPAERYVRQAPTQIDTLYRQAIERELGWLPHG
Sequences:
>Translated_195_residues MTDLTANAIACLGWGSLVWDPRDLPCRGSWHNDGPSLPVEFARESGAKKNQRGDKITLVVCPESARVRTYWILLDVPDLT AARRCLAAREGIPKNWETDIGFADCASGHAHGLEADTITTWGSAIGLAGVVWTNLPCKFNGQQVMPSEAEVIAFLRALDG TNRAPAERYVRQAPTQIDTLYRQAIERELGWLPHG >Mature_194_residues TDLTANAIACLGWGSLVWDPRDLPCRGSWHNDGPSLPVEFARESGAKKNQRGDKITLVVCPESARVRTYWILLDVPDLTA ARRCLAAREGIPKNWETDIGFADCASGHAHGLEADTITTWGSAIGLAGVVWTNLPCKFNGQQVMPSEAEVIAFLRALDGT NRAPAERYVRQAPTQIDTLYRQAIERELGWLPHG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21408; Mature: 21277
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLTANAIACLGWGSLVWDPRDLPCRGSWHNDGPSLPVEFARESGAKKNQRGDKITLVV CCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEE CPESARVRTYWILLDVPDLTAARRCLAAREGIPKNWETDIGFADCASGHAHGLEADTITT CCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHH WGSAIGLAGVVWTNLPCKFNGQQVMPSEAEVIAFLRALDGTNRAPAERYVRQAPTQIDTL HHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHH YRQAIERELGWLPHG HHHHHHHHHCCCCCC >Mature Secondary Structure TDLTANAIACLGWGSLVWDPRDLPCRGSWHNDGPSLPVEFARESGAKKNQRGDKITLVV CCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEE CPESARVRTYWILLDVPDLTAARRCLAAREGIPKNWETDIGFADCASGHAHGLEADTITT CCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHH WGSAIGLAGVVWTNLPCKFNGQQVMPSEAEVIAFLRALDGTNRAPAERYVRQAPTQIDTL HHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHH YRQAIERELGWLPHG HHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA