Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351823

Identifier: 115351823

GI number: 115351823

Start: 1958799

End: 1960556

Strand: Direct

Name: 115351823

Synonym: Bamb_1772

Alternate gene names: NA

Gene position: 1958799-1960556 (Clockwise)

Preceding gene: 115351822

Following gene: 115351824

Centisome position: 55.08

GC content: 69.91

Gene sequence:

>1758_bases
ATGAAGCCTGTCGTCCGTCTCACCGCCTCCGCCACGCGTGCGCTGCCGCGCTGGCTGCTGCTTACGCTCTGCCTCGTCTA
CGCGGCGTTCGGCCTGTTCGGCCGGGACCCGTGGAAGAACGAAGACGCGGCGGGCTTCGGCGTGATGTGGACGATGGCCA
CCGGCAGCTGGCACGACTGGCTGCTGCCGAATCTCGTCGGCAAGTTCATCACTACCGACGGGCCGCTCGGCTACTGGCTC
GGCGCGCTGTCGATCCGCGCGCTGGCGCCGTGGGTCGACGCCAGCAACGCGTCGCGCGTCGACACGGGCGTGCTGTTCTG
CGTCGCATGCGCGTTCGTCTGGTACGCCGCCTACCTGCTCGGCCGGCGCGCCGAGGTCCAGCCGTTCAAATACGCATTCG
GCGGCGAGCCGGAGCCGCGCGACTACGGCCGCACGCTCGCCGACGGCGCGCTGCTGATCCTCGTCGCATGCTTCGGGCTC
GCGGAGCGCGGCCACGAAACGACGCCGCAGCTCGCGCAGTTCGCGTGGATCGCGATGCTCGTGTACGGCATCGTGCGCGG
CATCGACAAGCCGATGCAGGGCGCGCTGTGGTGGGGCGTCGCGATGGGCCTCGTCGGCCTGTCCGGCAACCCGGTGCTCG
TGGTCGCGCTGCTCGCCGGCACGGCCGCGCTGTGGCTCATCACGCCGGAGATGCGCAACCTGCGCCTGCCGCTGATCGGC
GTGCCGCTCGCGGCCGCGATCTCCGCGCTGTGGCCGCTCGCCGCCTTCAACGCGGCGCCCGACGACGCCGCGTGGTTCTT
CAACCAGTGGATCCACGGCAGCCTGATGCGCTTCTCGGGCCCGCCGACCGCGGTGCTCGGCTATGCGGCGAAGAACCTGC
CGCTCTTCACGTGGCCCGCGTGGCCGCTCGCGATCTGGGCCTGGTGGAGCTGGGCCGGCATGCGCCGCCGCGCGCACATC
GCGATTCCGCTGTCGGTCGTCGTGCCGCTCGTCGCGCTCGTGATCCTGCAGAGCCAGCAGTCGAACCGCATGTACATGCT
GCTGCTGCCGCCGCTCGCGGTGCTCGCCACCTTCGCGCTGCCCACGCTCAAACGCGGCGCGATCAACGCGATCGACTGGT
TCGCGGTGCTGAGCTTCACGATCCTCGGCACCTTCGTGTGGCTCGTATGGCTCGCGTCGCTCACCGGCTTCCCGCATCCG
CTCGCGCGCAACCTCGCGCGCCTCGTGCCGGGCTACGAGCCGCACTTCAAGATCCTGTCGTTCATCTGCGCGGTGATCGT
CACCGTGTGCTGGTGCCTGCTCGCGCGCTGGCGCATCTCGCGCCAGCCGAAGGTGCTGTGGCGCAGCGTCGTGCTGTCGA
GCGCGGGCACCACGCTGATGTGGGTGCTGCTGATGACGCTGTGGCTGCCGATCGTCAACTACGGCCGGACCTACAGCGAC
GTCGCGCAGCAGATCGCATCGCATCTGCCGAAAGACTACGAATGCATCTCGCCGGTGCGCCTCGGTGATGCGCAGATTGC
GACGTTCGCGTACTTCGGCGACATGCACTTCGAATTCTCGGGCGAGTGCGACGTGATCCTGCGCCAGGACCGCGCGGACT
TCGGCGAGCCGAGCGCGATGTCGCGATACGTGTGGCGTCTCGTGTGGGAAGGCCGCCGCGTGGCCGACCGCGACGAGCGC
TTCCGCCTGTACGAGCGCATCGAGCGGCCGACGACGCCCGTCAAGCGCCGTGGCCCGCGCCGCCGGACGGTCGATTGA

Upstream 100 bases:

>100_bases
CCTGACGCGCACCATCCGGCACGTCTACAATGCCGGATGCTAGAAACCGGCTCGACCGCGCGCGCCCGCGCCGGCCGCCC
ATAACAAAACGCTCATCTGC

Downstream 100 bases:

>100_bases
CGATGTTCGCCGACATCCGCCGGATCGTCGGTCTCGCGTGGCCGGTGCTCGTCGGCCAGCTCGCGATCATCGCGTTCGGC
GTGATCGACACGGCGATGGT

Product: glycosyltransferase

Products: NA

Alternate protein names: Glycosyl Transferase Family Protein; Transmembrane Protein; Glycosyltransferase; Inner Membrane Protein; Glycosyl Transferase Family; PMT Family Glycosyltransferase; Glycosyltransferase Pmt Family

Number of amino acids: Translated: 585; Mature: 585

Protein sequence:

>585_residues
MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDWLLPNLVGKFITTDGPLGYWL
GALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLLGRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGL
AERGHETTPQLAQFAWIAMLVYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG
VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPAWPLAIWAWWSWAGMRRRAHI
AIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHP
LARNLARLVPGYEPHFKILSFICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD
VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAMSRYVWRLVWEGRRVADRDER
FRLYERIERPTTPVKRRGPRRRTVD

Sequences:

>Translated_585_residues
MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDWLLPNLVGKFITTDGPLGYWL
GALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLLGRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGL
AERGHETTPQLAQFAWIAMLVYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG
VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPAWPLAIWAWWSWAGMRRRAHI
AIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHP
LARNLARLVPGYEPHFKILSFICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD
VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAMSRYVWRLVWEGRRVADRDER
FRLYERIERPTTPVKRRGPRRRTVD
>Mature_585_residues
MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDWLLPNLVGKFITTDGPLGYWL
GALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLLGRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGL
AERGHETTPQLAQFAWIAMLVYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG
VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPAWPLAIWAWWSWAGMRRRAHI
AIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHP
LARNLARLVPGYEPHFKILSFICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD
VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAMSRYVWRLVWEGRRVADRDER
FRLYERIERPTTPVKRRGPRRRTVD

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 65470; Mature: 65470

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHH
LLPNLVGKFITTDGPLGYWLGALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGLAERGHETTPQLAQFAWIAML
CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCHHCCCCCEEC
VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPA
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCCEEECCC
WPLAIWAWWSWAGMRRRAHIAIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFAL
HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
PTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHPLARNLARLVPGYEPHFKILS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHH
FICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH
VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAM
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEECCEEEEECCCCCEEEECCCCCCCCCHHH
SRYVWRLVWEGRRVADRDERFRLYERIERPTTPVKRRGPRRRTVD
HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHH
LLPNLVGKFITTDGPLGYWLGALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
GRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGLAERGHETTPQLAQFAWIAML
CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
VYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG
HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCHHCCCCCEEC
VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPA
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCCEEECCC
WPLAIWAWWSWAGMRRRAHIAIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFAL
HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
PTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHPLARNLARLVPGYEPHFKILS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHH
FICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH
VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAM
HHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEECCEEEEECCCCCEEEECCCCCCCCCHHH
SRYVWRLVWEGRRVADRDERFRLYERIERPTTPVKRRGPRRRTVD
HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA