| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351823
Identifier: 115351823
GI number: 115351823
Start: 1958799
End: 1960556
Strand: Direct
Name: 115351823
Synonym: Bamb_1772
Alternate gene names: NA
Gene position: 1958799-1960556 (Clockwise)
Preceding gene: 115351822
Following gene: 115351824
Centisome position: 55.08
GC content: 69.91
Gene sequence:
>1758_bases ATGAAGCCTGTCGTCCGTCTCACCGCCTCCGCCACGCGTGCGCTGCCGCGCTGGCTGCTGCTTACGCTCTGCCTCGTCTA CGCGGCGTTCGGCCTGTTCGGCCGGGACCCGTGGAAGAACGAAGACGCGGCGGGCTTCGGCGTGATGTGGACGATGGCCA CCGGCAGCTGGCACGACTGGCTGCTGCCGAATCTCGTCGGCAAGTTCATCACTACCGACGGGCCGCTCGGCTACTGGCTC GGCGCGCTGTCGATCCGCGCGCTGGCGCCGTGGGTCGACGCCAGCAACGCGTCGCGCGTCGACACGGGCGTGCTGTTCTG CGTCGCATGCGCGTTCGTCTGGTACGCCGCCTACCTGCTCGGCCGGCGCGCCGAGGTCCAGCCGTTCAAATACGCATTCG GCGGCGAGCCGGAGCCGCGCGACTACGGCCGCACGCTCGCCGACGGCGCGCTGCTGATCCTCGTCGCATGCTTCGGGCTC GCGGAGCGCGGCCACGAAACGACGCCGCAGCTCGCGCAGTTCGCGTGGATCGCGATGCTCGTGTACGGCATCGTGCGCGG CATCGACAAGCCGATGCAGGGCGCGCTGTGGTGGGGCGTCGCGATGGGCCTCGTCGGCCTGTCCGGCAACCCGGTGCTCG TGGTCGCGCTGCTCGCCGGCACGGCCGCGCTGTGGCTCATCACGCCGGAGATGCGCAACCTGCGCCTGCCGCTGATCGGC GTGCCGCTCGCGGCCGCGATCTCCGCGCTGTGGCCGCTCGCCGCCTTCAACGCGGCGCCCGACGACGCCGCGTGGTTCTT CAACCAGTGGATCCACGGCAGCCTGATGCGCTTCTCGGGCCCGCCGACCGCGGTGCTCGGCTATGCGGCGAAGAACCTGC CGCTCTTCACGTGGCCCGCGTGGCCGCTCGCGATCTGGGCCTGGTGGAGCTGGGCCGGCATGCGCCGCCGCGCGCACATC GCGATTCCGCTGTCGGTCGTCGTGCCGCTCGTCGCGCTCGTGATCCTGCAGAGCCAGCAGTCGAACCGCATGTACATGCT GCTGCTGCCGCCGCTCGCGGTGCTCGCCACCTTCGCGCTGCCCACGCTCAAACGCGGCGCGATCAACGCGATCGACTGGT TCGCGGTGCTGAGCTTCACGATCCTCGGCACCTTCGTGTGGCTCGTATGGCTCGCGTCGCTCACCGGCTTCCCGCATCCG CTCGCGCGCAACCTCGCGCGCCTCGTGCCGGGCTACGAGCCGCACTTCAAGATCCTGTCGTTCATCTGCGCGGTGATCGT CACCGTGTGCTGGTGCCTGCTCGCGCGCTGGCGCATCTCGCGCCAGCCGAAGGTGCTGTGGCGCAGCGTCGTGCTGTCGA GCGCGGGCACCACGCTGATGTGGGTGCTGCTGATGACGCTGTGGCTGCCGATCGTCAACTACGGCCGGACCTACAGCGAC GTCGCGCAGCAGATCGCATCGCATCTGCCGAAAGACTACGAATGCATCTCGCCGGTGCGCCTCGGTGATGCGCAGATTGC GACGTTCGCGTACTTCGGCGACATGCACTTCGAATTCTCGGGCGAGTGCGACGTGATCCTGCGCCAGGACCGCGCGGACT TCGGCGAGCCGAGCGCGATGTCGCGATACGTGTGGCGTCTCGTGTGGGAAGGCCGCCGCGTGGCCGACCGCGACGAGCGC TTCCGCCTGTACGAGCGCATCGAGCGGCCGACGACGCCCGTCAAGCGCCGTGGCCCGCGCCGCCGGACGGTCGATTGA
Upstream 100 bases:
>100_bases CCTGACGCGCACCATCCGGCACGTCTACAATGCCGGATGCTAGAAACCGGCTCGACCGCGCGCGCCCGCGCCGGCCGCCC ATAACAAAACGCTCATCTGC
Downstream 100 bases:
>100_bases CGATGTTCGCCGACATCCGCCGGATCGTCGGTCTCGCGTGGCCGGTGCTCGTCGGCCAGCTCGCGATCATCGCGTTCGGC GTGATCGACACGGCGATGGT
Product: glycosyltransferase
Products: NA
Alternate protein names: Glycosyl Transferase Family Protein; Transmembrane Protein; Glycosyltransferase; Inner Membrane Protein; Glycosyl Transferase Family; PMT Family Glycosyltransferase; Glycosyltransferase Pmt Family
Number of amino acids: Translated: 585; Mature: 585
Protein sequence:
>585_residues MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDWLLPNLVGKFITTDGPLGYWL GALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLLGRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGL AERGHETTPQLAQFAWIAMLVYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPAWPLAIWAWWSWAGMRRRAHI AIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHP LARNLARLVPGYEPHFKILSFICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAMSRYVWRLVWEGRRVADRDER FRLYERIERPTTPVKRRGPRRRTVD
Sequences:
>Translated_585_residues MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDWLLPNLVGKFITTDGPLGYWL GALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLLGRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGL AERGHETTPQLAQFAWIAMLVYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPAWPLAIWAWWSWAGMRRRAHI AIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHP LARNLARLVPGYEPHFKILSFICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAMSRYVWRLVWEGRRVADRDER FRLYERIERPTTPVKRRGPRRRTVD >Mature_585_residues MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDWLLPNLVGKFITTDGPLGYWL GALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLLGRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGL AERGHETTPQLAQFAWIAMLVYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPAWPLAIWAWWSWAGMRRRAHI AIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFALPTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHP LARNLARLVPGYEPHFKILSFICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAMSRYVWRLVWEGRRVADRDER FRLYERIERPTTPVKRRGPRRRTVD
Specific function: Unknown
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65470; Mature: 65470
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHH LLPNLVGKFITTDGPLGYWLGALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLL HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH GRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGLAERGHETTPQLAQFAWIAML CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCHHCCCCCEEC VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPA CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCCEEECCC WPLAIWAWWSWAGMRRRAHIAIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFAL HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH PTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHPLARNLARLVPGYEPHFKILS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHH FICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAM HHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEECCEEEEECCCCCEEEECCCCCCCCCHHH SRYVWRLVWEGRRVADRDERFRLYERIERPTTPVKRRGPRRRTVD HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCC >Mature Secondary Structure MKPVVRLTASATRALPRWLLLTLCLVYAAFGLFGRDPWKNEDAAGFGVMWTMATGSWHDW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHH LLPNLVGKFITTDGPLGYWLGALSIRALAPWVDASNASRVDTGVLFCVACAFVWYAAYLL HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH GRRAEVQPFKYAFGGEPEPRDYGRTLADGALLILVACFGLAERGHETTPQLAQFAWIAML CCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH VYGIVRGIDKPMQGALWWGVAMGLVGLSGNPVLVVALLAGTAALWLITPEMRNLRLPLIG HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEECCCHHCCCCCEEC VPLAAAISALWPLAAFNAAPDDAAWFFNQWIHGSLMRFSGPPTAVLGYAAKNLPLFTWPA CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCCEEECCC WPLAIWAWWSWAGMRRRAHIAIPLSVVVPLVALVILQSQQSNRMYMLLLPPLAVLATFAL HHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHH PTLKRGAINAIDWFAVLSFTILGTFVWLVWLASLTGFPHPLARNLARLVPGYEPHFKILS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHH FICAVIVTVCWCLLARWRISRQPKVLWRSVVLSSAGTTLMWVLLMTLWLPIVNYGRTYSD HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHH VAQQIASHLPKDYECISPVRLGDAQIATFAYFGDMHFEFSGECDVILRQDRADFGEPSAM HHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEECCEEEEECCCCCEEEECCCCCCCCCHHH SRYVWRLVWEGRRVADRDERFRLYERIERPTTPVKRRGPRRRTVD HHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA