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The map label for this gene is ybbI [C]

Identifier: 115351819

GI number: 115351819

Start: 1955239

End: 1955739

Strand: Direct

Name: ybbI [C]

Synonym: Bamb_1768

Alternate gene names: 115351819

Gene position: 1955239-1955739 (Clockwise)

Preceding gene: 115351818

Following gene: 115351820

Centisome position: 54.98

GC content: 69.26

Gene sequence:

>501_bases
ATGCCGAACGATGCCTCCGCCCCGTTGCTGACCGTGAGTGACGCCGCGTCGCGGCTCGGCGTCACGCCGCGCACGCTGAA
GTATTACGAGGAGCGCGGACTCGTCACGCCGTCGCGCAGCGGCGGCCGCTATCGCCTTTACGATGAGGCCGATCTCGAAC
GCTTTGCCCGCATCCTGCGGCTGCGCGCGCTCGGCTTTTCGCTGCACGGCATCACCGAGATGCTCAAGCGTCCGCTGGAA
GAAACGGGCGACGGCCGGCGCCGCTATTCGGACGCGTCGCTGCGCGACATCCGCACGGGCCTCGCCGAGCAGATCGACAC
GCTCGACCAGCGGATCGCGGCCGTCCAGCGCGAACTGAAGGAAGCCGTCGCGCTGCGCAAGGAACTGCAGCACGACATCG
ACTACATCGAGCGGCGGCTCGCGGGCGAAAATCCCGACGCGCTGATCGCGCAGCGGCAGGCCGAAGCCCGCACGCGCCGC
GCGCGCAAGGACCGGGAATGA

Upstream 100 bases:

>100_bases
CGCTTTTGCCCGGCGGCCGTTTTTTCGACCCAACCTGTACGTGAACGTACAGGTTGATCTATAATCGCGCCATCGCACCG
ACCGAAGCCCGCCCCTCCCC

Downstream 100 bases:

>100_bases
ACGTCGCGCGCGGTCGCTCGCCGCTGTGGAGCCGCGCGAACCTGCGCGCGGATCTCTTCCCATGGGCGCTCGCGCTCGTC
ACCGGCATCGACTACTTCGA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPNDASAPLLTVSDAASRLGVTPRTLKYYEERGLVTPSRSGGRYRLYDEADLERFARILRLRALGFSLHGITEMLKRPLE
ETGDGRRRYSDASLRDIRTGLAEQIDTLDQRIAAVQRELKEAVALRKELQHDIDYIERRLAGENPDALIAQRQAEARTRR
ARKDRE

Sequences:

>Translated_166_residues
MPNDASAPLLTVSDAASRLGVTPRTLKYYEERGLVTPSRSGGRYRLYDEADLERFARILRLRALGFSLHGITEMLKRPLE
ETGDGRRRYSDASLRDIRTGLAEQIDTLDQRIAAVQRELKEAVALRKELQHDIDYIERRLAGENPDALIAQRQAEARTRR
ARKDRE
>Mature_165_residues
PNDASAPLLTVSDAASRLGVTPRTLKYYEERGLVTPSRSGGRYRLYDEADLERFARILRLRALGFSLHGITEMLKRPLEE
TGDGRRRYSDASLRDIRTGLAEQIDTLDQRIAAVQRELKEAVALRKELQHDIDYIERRLAGENPDALIAQRQAEARTRRA
RKDRE

Specific function: Could be a copper-dependent transcriptional activator of the ATPase HI_0290 [H]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 19004; Mature: 18873

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNDASAPLLTVSDAASRLGVTPRTLKYYEERGLVTPSRSGGRYRLYDEADLERFARILR
CCCCCCCCEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHH
LRALGFSLHGITEMLKRPLEETGDGRRRYSDASLRDIRTGLAEQIDTLDQRIAAVQRELK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAVALRKELQHDIDYIERRLAGENPDALIAQRQAEARTRRARKDRE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PNDASAPLLTVSDAASRLGVTPRTLKYYEERGLVTPSRSGGRYRLYDEADLERFARILR
CCCCCCCEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHH
LRALGFSLHGITEMLKRPLEETGDGRRRYSDASLRDIRTGLAEQIDTLDQRIAAVQRELK
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAVALRKELQHDIDYIERRLAGENPDALIAQRQAEARTRRARKDRE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]