| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351745
Identifier: 115351745
GI number: 115351745
Start: 1875379
End: 1876491
Strand: Direct
Name: 115351745
Synonym: Bamb_1693
Alternate gene names: NA
Gene position: 1875379-1876491 (Clockwise)
Preceding gene: 115351735
Following gene: 115351746
Centisome position: 52.73
GC content: 70.17
Gene sequence:
>1113_bases ATGCTGGGCGTATGGCTGTGCGGGTGGCTCGTGGTGCATACCGCGCGGGCGGACACGACGACCGTCACCGACCTGGCCGG GCGGCAGGTCCGGATTCCCGCGCGCGTCGAGCGCGTGCTGCTCGGCGAGGGCCGCCTGCTGCCGGCGCTGGCGGTGGTCG ACGGCGACGATCCGACGCGCCGCCTCGTTGGCATGATGGGTGACTTCGAGCAACTCGATCCCGCGAGCTACGCGCAATGG CTCGCGCGCTTCCCGCGCCTGAAGGACGTGCCGCGCATCGGACGCTCGCAGACCGGCAGCTTCAGCGACGAGCGCGCGCT CGCGCTGCGTCCTCAGGTTGCGATCTTCGGGCTCGGCGGCGGCCACGGCCCCGGCGAGCGCGATCGCGAAACGCTCGCGC GGCTCGAGGCGGCCGGCGTCGCGATCGTGTTCGTCGACTTCCGGCACGACCCGCTCGTCAACACGCCGCGCAGCATCGCG CTGCTCGGCCAGGTATTCGGCTCGCCGCAGCGCGCGGCGGAATTCAACGCGTACTGGCAACAGCAGCTCGACCTCGTCCG CACGCGGCTCGCGACCGCCCACCCGGCCGCGCCGAGCGTGTTCCTCGAAAGCCGCGTCGGCCTGTCGAGCGACTGCTGCG ACACGATGACCGGCATGATGGGCCGCCTCCTCGACGCCGCCGGCGGCAACAACGTCGCGAAAGGCCGCGTGCCCGGCGAG CACGGCACGCTGAACCCCGAATACCTGCTGAGCCGCCAGCCCGATTTCTACATCGGCACCGCGATTGGCTCGCTCCAGAC GCTGCAAAGCGCGCCGCAACGCATCGCGCTCGGCGCCGGCGTGCCGCACGACGCCGCCGTCCGCTCGCTCGACCGGTCGC TGAAGCGGCCGCAGATCACGCGGCTGCGCGCGGTCCGTGAGCGGCGTGCGTATGCGATCTGGCATCACTTCTACAATTCA CCGTTCAACGTCGTCGCCGTGCAGGTGATGGCCAAGTGGCTGCATCCGGCACTGTTCACCGATCTCGATCCGCGCACCAC GTTCGACACGATGGTGCGACGCTTCCAGCCCGTTCCGCTTCAAGGCGAATACTGGATGCAGGAAGGATCCTGA
Upstream 100 bases:
>100_bases CGCCCATGCCACGGCCCCGGCTCGGCTACAATTAAATGAGAATTATTCTCATTTATATCGTATCGGGAGTCACGTGAAAA AGACAAGCGGAATGTGGGCC
Downstream 100 bases:
>100_bases CATGCGCATGCCCGCCTCCTCCATGCGCCGCGCCCTCCTCGTTGCCGGATTGGCCGGCCCGCTCGGCGGCCGGCTCGCGC CCGCCTGTGCCGCCGATGCA
Product: ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein
Products: NA
Alternate protein names: Ferrichrome/Ferrioxamine B Periplasmic Transporter; Iron Transporter; Fe3+-Hydroxamate ABC Transporter Periplasmic Protein; Iron(III) ABC Transporter; Ferrisiderophore Receptor Irp6A; Copper Amine Oxidase Domain Protein; Copper Amine Oxidase Domain-Containing Protein
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MLGVWLCGWLVVHTARADTTTVTDLAGRQVRIPARVERVLLGEGRLLPALAVVDGDDPTRRLVGMMGDFEQLDPASYAQW LARFPRLKDVPRIGRSQTGSFSDERALALRPQVAIFGLGGGHGPGERDRETLARLEAAGVAIVFVDFRHDPLVNTPRSIA LLGQVFGSPQRAAEFNAYWQQQLDLVRTRLATAHPAAPSVFLESRVGLSSDCCDTMTGMMGRLLDAAGGNNVAKGRVPGE HGTLNPEYLLSRQPDFYIGTAIGSLQTLQSAPQRIALGAGVPHDAAVRSLDRSLKRPQITRLRAVRERRAYAIWHHFYNS PFNVVAVQVMAKWLHPALFTDLDPRTTFDTMVRRFQPVPLQGEYWMQEGS
Sequences:
>Translated_370_residues MLGVWLCGWLVVHTARADTTTVTDLAGRQVRIPARVERVLLGEGRLLPALAVVDGDDPTRRLVGMMGDFEQLDPASYAQW LARFPRLKDVPRIGRSQTGSFSDERALALRPQVAIFGLGGGHGPGERDRETLARLEAAGVAIVFVDFRHDPLVNTPRSIA LLGQVFGSPQRAAEFNAYWQQQLDLVRTRLATAHPAAPSVFLESRVGLSSDCCDTMTGMMGRLLDAAGGNNVAKGRVPGE HGTLNPEYLLSRQPDFYIGTAIGSLQTLQSAPQRIALGAGVPHDAAVRSLDRSLKRPQITRLRAVRERRAYAIWHHFYNS PFNVVAVQVMAKWLHPALFTDLDPRTTFDTMVRRFQPVPLQGEYWMQEGS >Mature_370_residues MLGVWLCGWLVVHTARADTTTVTDLAGRQVRIPARVERVLLGEGRLLPALAVVDGDDPTRRLVGMMGDFEQLDPASYAQW LARFPRLKDVPRIGRSQTGSFSDERALALRPQVAIFGLGGGHGPGERDRETLARLEAAGVAIVFVDFRHDPLVNTPRSIA LLGQVFGSPQRAAEFNAYWQQQLDLVRTRLATAHPAAPSVFLESRVGLSSDCCDTMTGMMGRLLDAAGGNNVAKGRVPGE HGTLNPEYLLSRQPDFYIGTAIGSLQTLQSAPQRIALGAGVPHDAAVRSLDRSLKRPQITRLRAVRERRAYAIWHHFYNS PFNVVAVQVMAKWLHPALFTDLDPRTTFDTMVRRFQPVPLQGEYWMQEGS
Specific function: Unknown
COG id: COG0614
COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40850; Mature: 40850
Theoretical pI: Translated: 9.68; Mature: 9.68
Prosite motif: PS50983 FE_B12_PBP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGVWLCGWLVVHTARADTTTVTDLAGRQVRIPARVERVLLGEGRLLPALAVVDGDDPTR CCHHHHHHHHHHHHCCCCCCHHHHHCCCEEECHHHHHHHHHCCCCEEEEEEEECCCCHHH RLVGMMGDFEQLDPASYAQWLARFPRLKDVPRIGRSQTGSFSDERALALRPQVAIFGLGG HHHHHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCC GHGPGERDRETLARLEAAGVAIVFVDFRHDPLVNTPRSIALLGQVFGSPQRAAEFNAYWQ CCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH QQLDLVRTRLATAHPAAPSVFLESRVGLSSDCCDTMTGMMGRLLDAAGGNNVAKGRVPGE HHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC HGTLNPEYLLSRQPDFYIGTAIGSLQTLQSAPQRIALGAGVPHDAAVRSLDRSLKRPQIT CCCCCHHHHHCCCCCEEEEHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHCCCHHH RLRAVRERRAYAIWHHFYNSPFNVVAVQVMAKWLHPALFTDLDPRTTFDTMVRRFQPVPL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC QGEYWMQEGS CCCHHCCCCC >Mature Secondary Structure MLGVWLCGWLVVHTARADTTTVTDLAGRQVRIPARVERVLLGEGRLLPALAVVDGDDPTR CCHHHHHHHHHHHHCCCCCCHHHHHCCCEEECHHHHHHHHHCCCCEEEEEEEECCCCHHH RLVGMMGDFEQLDPASYAQWLARFPRLKDVPRIGRSQTGSFSDERALALRPQVAIFGLGG HHHHHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCC GHGPGERDRETLARLEAAGVAIVFVDFRHDPLVNTPRSIALLGQVFGSPQRAAEFNAYWQ CCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH QQLDLVRTRLATAHPAAPSVFLESRVGLSSDCCDTMTGMMGRLLDAAGGNNVAKGRVPGE HHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC HGTLNPEYLLSRQPDFYIGTAIGSLQTLQSAPQRIALGAGVPHDAAVRSLDRSLKRPQIT CCCCCHHHHHCCCCCEEEEHHHHHHHHHHHCCHHEEECCCCCHHHHHHHHHHHHCCCHHH RLRAVRERRAYAIWHHFYNSPFNVVAVQVMAKWLHPALFTDLDPRTTFDTMVRRFQPVPL HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC QGEYWMQEGS CCCHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA