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The map label for this gene is amyD [H]

Identifier: 115351645

GI number: 115351645

Start: 1763019

End: 1763891

Strand: Direct

Name: amyD [H]

Synonym: Bamb_1592

Alternate gene names: 115351645

Gene position: 1763019-1763891 (Clockwise)

Preceding gene: 115351644

Following gene: 115351646

Centisome position: 49.57

GC content: 67.93

Gene sequence:

>873_bases
ATGAGCACGCTCACGACCGGCGCCACGCCGCGCGACGCGAAGGCGTGGCTCGTCACGCCCGCGCTCGCGTTCATCGTCGC
GCTGTTCATCTACCCGTTCGCCTACGGCCTCGTGCTGTCATTCCAGCCGATGAACGGCGGCGGCGCGCTTGCGAACTACG
TGCAGTTCTTCACCGACACCGCGATGTGGCCGACCGTGCTCGTCACGCTGAAGCTCGCGGTGCCGGCGACACTCATCAAC
GTCGGCATCTCGGTGCCGGTCGCGTTCGCGCTGCGCCGCAACTCGCCGTACCAGAAGTTCGTCACGACGCTGCTCGTGAT
TCCGATCACGCTCGGCACGGTGCTCGTCGCCGACGGGATGCTCACGTACTTCGGCCCGAACGGCTGGTTCCCGCAAGCGC
TGCAGGGGCTGCACCTGTACACGGACGAAGTGCGCCTCACGCACAACTACTGGGGCGTGCTGCTGTCGCTGATCGTGTCG
GGCTTTCCGTTCGCGTTCCTGCTGATGCTGTCGTACATCAGCGGCATCGACCCGACGCTCGCACGCGCCGCGGCCACGCT
CGGCGCGAACCCGTGGCAGCAGTTCCGGCAGATCTACCTGCCGCTGCTCGTGCCGGGGCTCACGATGGCCGCGTGCCTGT
CGTTCGTGCAGGCGTTCTCGGTGTTCCCGTCGGCCGTGCTGCTCGGCGCGCCGGCCGGGCCGACGCGCGTGATCTCGATC
GCGGCCGCCGAAGCCGCGTTCGAGAGCTACGACTATTCGCTCGCGTCGGCGATCGCGATCGTGATGGGCTTCGTGCAACT
GCTGGTGGTCGCGTCGATGCTCGGCGCGCGCCGCTTCTTCTATACGGGGCCGGTGACAGGGGGCAAGGGCTGA

Upstream 100 bases:

>100_bases
CGGCTGCGGGTGGCGCCGGCGCGCACGCTCGTCTATGCGGGAGACGTGCAATGAACGGTCGCCGTGCCGCATGCGCGGCA
ATGCGCCGGCGGGAGGCCGC

Downstream 100 bases:

>100_bases
TGGCGACCGACAATCATGCCGCGCCGGCCTGGCCGCCGAAGCAGGGCGCGCCCGATGCGCGCCCCGTCAACGCGAGGACA
CCGCAGAAGATGAGAAGCAA

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSTLTTGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDTAMWPTVLVTLKLAVPATLIN
VGISVPVAFALRRNSPYQKFVTTLLVIPITLGTVLVADGMLTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVS
GFPFAFLLMLSYISGIDPTLARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVISI
AAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGPVTGGKG

Sequences:

>Translated_290_residues
MSTLTTGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDTAMWPTVLVTLKLAVPATLIN
VGISVPVAFALRRNSPYQKFVTTLLVIPITLGTVLVADGMLTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVS
GFPFAFLLMLSYISGIDPTLARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVISI
AAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGPVTGGKG
>Mature_289_residues
STLTTGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDTAMWPTVLVTLKLAVPATLINV
GISVPVAFALRRNSPYQKFVTTLLVIPITLGTVLVADGMLTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVSG
FPFAFLLMLSYISGIDPTLARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVISIA
AAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGPVTGGKG

Specific function: Probably part of a binding-protein-dependent transport system starch degradation products. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788764, Length=214, Percent_Identity=27.1028037383178, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787080, Length=214, Percent_Identity=26.6355140186916, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31020; Mature: 30889

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLTTGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHH
AMWPTVLVTLKLAVPATLINVGISVPVAFALRRNSPYQKFVTTLLVIPITLGTVLVADGM
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCH
LTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVSGFPFAFLLMLSYISGIDPTL
HEEECCCCCCHHHHCCHHHHHHHEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
ARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVISI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHEEEH
AAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGPVTGGKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC
>Mature Secondary Structure 
STLTTGATPRDAKAWLVTPALAFIVALFIYPFAYGLVLSFQPMNGGGALANYVQFFTDT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHH
AMWPTVLVTLKLAVPATLINVGISVPVAFALRRNSPYQKFVTTLLVIPITLGTVLVADGM
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCH
LTYFGPNGWFPQALQGLHLYTDEVRLTHNYWGVLLSLIVSGFPFAFLLMLSYISGIDPTL
HEEECCCCCCHHHHCCHHHHHHHEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHH
ARAAATLGANPWQQFRQIYLPLLVPGLTMAACLSFVQAFSVFPSAVLLGAPAGPTRVISI
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHEEEH
AAAEAAFESYDYSLASAIAIVMGFVQLLVVASMLGARRFFYTGPVTGGKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]

Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1874408 [H]