Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351640

Identifier: 115351640

GI number: 115351640

Start: 1757228

End: 1758283

Strand: Direct

Name: 115351640

Synonym: Bamb_1587

Alternate gene names: NA

Gene position: 1757228-1758283 (Clockwise)

Preceding gene: 115351639

Following gene: 115351641

Centisome position: 49.41

GC content: 65.91

Gene sequence:

>1056_bases
ATGCAATTTTTCGACGATTCGCTGCACCCGGAAAACCAGGACAAGGTAGTCATCACGGTCGCGCCGTACGGCCCCGAATG
GATGCCCGCCGATTTTCCGGAAGACATTCCGGTGACGATGGACGAGCACGTGCAGAAGGCCGTCGACTGCTACAACGCGG
GCGCGACGGTGCTGCACATGCATGTGCGCGAACTCGACGGGAAGGGCAGCAAGCGGCTGTCGAAATTCAACGAACTGCTC
GGCCGGCTGCGCGAGGCCGTGCCCGACATGATCCTGCAGGTGGGCGGCTCGATCTCGTTCGCGCCGGAAGGCGACGGCGC
CGACGCGAAATGGCTGTCCGACGACACACGTCACATGCTCGCCGAGCTGACCCCGAAGCCCGACCAGGTGACGGTCGCGA
TCAACACCGTGCAGATGAACATCACCGAGCTGATGAACCGCCAGGACATCGCCGGCACGTCGCTGAACGAACCCGCTCTG
TGGGACGCGTACCGCGAGATGACGGTGCCGGCCGGCCCCGGCTGGGTCGACGAACACCTGCGCCGCCTGCAGGCGGCCGG
CATCCAGCCGCATTTCCAGCTCACCGGCATGCATGCGCTCGAGACGCTCGAACGGATCATCCGGCGCGGCGTCTATCGCG
GCCCGCTGAACGTCACGTGGGTCGGCATCGGCGGCGGCTTCGACGGCCCCAATCCATACAACTTCATGGAATTCGTGCGG
CGCTGCCCGGACGGCGCGTGCATTACGTTCGAAACGCTGATGAAGAACGTGCTGCCGATCAACACGGTCGCGATGGCGCT
GGGCCTGCATCCGCGCTGCGGGATCGAGGACACGATCATCGATCAGAAGGGCAACCGGATGACCTCGGTGCAGCAGGTCG
AGCAGTGCGTGCGGATCGCGCGCGAACTCGGCCGCGACATCGCGACCGGCAAGGAAGCAAAGGCGATCTACAAGATCGGC
GTGCAGTACGACGGCATCGACGAGACGCTCGCGCAGCTCGGGATGGCGCCGAACCGCCGGCCGGGCCAGGCGAGCGTGCC
GCTGCGCGCGGCCTGA

Upstream 100 bases:

>100_bases
ACCGATCCACGACCGATACAACGCGCCGGGTTCGCCGCCCGGCGCGACGGGATACGCACGCCCGTACGCCCGAACACAAC
GATTTCCACTGGAGGACGAC

Downstream 100 bases:

>100_bases
CGCGCCGCGCAGCCGGGTAGCGGCCTTGGTGGCCGCCGCCCGCCGATCGTTGTGGCGTGGCACCCACCCCTGCGCACGGC
GCGGGGGCTGACTCCGGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHMHVRELDGKGSKRLSKFNELL
GRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHMLAELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPAL
WDAYREMTVPAGPGWVDEHLRRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR
RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIARELGRDIATGKEAKAIYKIG
VQYDGIDETLAQLGMAPNRRPGQASVPLRAA

Sequences:

>Translated_351_residues
MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHMHVRELDGKGSKRLSKFNELL
GRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHMLAELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPAL
WDAYREMTVPAGPGWVDEHLRRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR
RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIARELGRDIATGKEAKAIYKIG
VQYDGIDETLAQLGMAPNRRPGQASVPLRAA
>Mature_351_residues
MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHMHVRELDGKGSKRLSKFNELL
GRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHMLAELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPAL
WDAYREMTVPAGPGWVDEHLRRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR
RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIARELGRDIATGKEAKAIYKIG
VQYDGIDETLAQLGMAPNRRPGQASVPLRAA

Specific function: Unknown

COG id: COG3246

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38853; Mature: 38853

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHM
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
HVRELDGKGSKRLSKFNELLGRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHML
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHH
AELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPALWDAYREMTVPAGPGWVDEHL
HHCCCCCCEEEEEEEEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHH
RRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR
HHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHH
RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIA
HCCCCCEEEHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
RELGRDIATGKEAKAIYKIGVQYDGIDETLAQLGMAPNRRPGQASVPLRAA
HHHCHHHHCCCHHHEEEEECCEECCHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHM
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH
HVRELDGKGSKRLSKFNELLGRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHML
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHH
AELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPALWDAYREMTVPAGPGWVDEHL
HHCCCCCCEEEEEEEEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHH
RRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR
HHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHH
RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIA
HCCCCCEEEHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
RELGRDIATGKEAKAIYKIGVQYDGIDETLAQLGMAPNRRPGQASVPLRAA
HHHCHHHHCCCHHHEEEEECCEECCHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA