| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351640
Identifier: 115351640
GI number: 115351640
Start: 1757228
End: 1758283
Strand: Direct
Name: 115351640
Synonym: Bamb_1587
Alternate gene names: NA
Gene position: 1757228-1758283 (Clockwise)
Preceding gene: 115351639
Following gene: 115351641
Centisome position: 49.41
GC content: 65.91
Gene sequence:
>1056_bases ATGCAATTTTTCGACGATTCGCTGCACCCGGAAAACCAGGACAAGGTAGTCATCACGGTCGCGCCGTACGGCCCCGAATG GATGCCCGCCGATTTTCCGGAAGACATTCCGGTGACGATGGACGAGCACGTGCAGAAGGCCGTCGACTGCTACAACGCGG GCGCGACGGTGCTGCACATGCATGTGCGCGAACTCGACGGGAAGGGCAGCAAGCGGCTGTCGAAATTCAACGAACTGCTC GGCCGGCTGCGCGAGGCCGTGCCCGACATGATCCTGCAGGTGGGCGGCTCGATCTCGTTCGCGCCGGAAGGCGACGGCGC CGACGCGAAATGGCTGTCCGACGACACACGTCACATGCTCGCCGAGCTGACCCCGAAGCCCGACCAGGTGACGGTCGCGA TCAACACCGTGCAGATGAACATCACCGAGCTGATGAACCGCCAGGACATCGCCGGCACGTCGCTGAACGAACCCGCTCTG TGGGACGCGTACCGCGAGATGACGGTGCCGGCCGGCCCCGGCTGGGTCGACGAACACCTGCGCCGCCTGCAGGCGGCCGG CATCCAGCCGCATTTCCAGCTCACCGGCATGCATGCGCTCGAGACGCTCGAACGGATCATCCGGCGCGGCGTCTATCGCG GCCCGCTGAACGTCACGTGGGTCGGCATCGGCGGCGGCTTCGACGGCCCCAATCCATACAACTTCATGGAATTCGTGCGG CGCTGCCCGGACGGCGCGTGCATTACGTTCGAAACGCTGATGAAGAACGTGCTGCCGATCAACACGGTCGCGATGGCGCT GGGCCTGCATCCGCGCTGCGGGATCGAGGACACGATCATCGATCAGAAGGGCAACCGGATGACCTCGGTGCAGCAGGTCG AGCAGTGCGTGCGGATCGCGCGCGAACTCGGCCGCGACATCGCGACCGGCAAGGAAGCAAAGGCGATCTACAAGATCGGC GTGCAGTACGACGGCATCGACGAGACGCTCGCGCAGCTCGGGATGGCGCCGAACCGCCGGCCGGGCCAGGCGAGCGTGCC GCTGCGCGCGGCCTGA
Upstream 100 bases:
>100_bases ACCGATCCACGACCGATACAACGCGCCGGGTTCGCCGCCCGGCGCGACGGGATACGCACGCCCGTACGCCCGAACACAAC GATTTCCACTGGAGGACGAC
Downstream 100 bases:
>100_bases CGCGCCGCGCAGCCGGGTAGCGGCCTTGGTGGCCGCCGCCCGCCGATCGTTGTGGCGTGGCACCCACCCCTGCGCACGGC GCGGGGGCTGACTCCGGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 351; Mature: 351
Protein sequence:
>351_residues MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHMHVRELDGKGSKRLSKFNELL GRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHMLAELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPAL WDAYREMTVPAGPGWVDEHLRRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIARELGRDIATGKEAKAIYKIG VQYDGIDETLAQLGMAPNRRPGQASVPLRAA
Sequences:
>Translated_351_residues MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHMHVRELDGKGSKRLSKFNELL GRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHMLAELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPAL WDAYREMTVPAGPGWVDEHLRRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIARELGRDIATGKEAKAIYKIG VQYDGIDETLAQLGMAPNRRPGQASVPLRAA >Mature_351_residues MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHMHVRELDGKGSKRLSKFNELL GRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHMLAELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPAL WDAYREMTVPAGPGWVDEHLRRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIARELGRDIATGKEAKAIYKIG VQYDGIDETLAQLGMAPNRRPGQASVPLRAA
Specific function: Unknown
COG id: COG3246
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38853; Mature: 38853
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHM CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH HVRELDGKGSKRLSKFNELLGRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHML HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHH AELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPALWDAYREMTVPAGPGWVDEHL HHCCCCCCEEEEEEEEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHH RRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR HHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHH RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIA HCCCCCEEEHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH RELGRDIATGKEAKAIYKIGVQYDGIDETLAQLGMAPNRRPGQASVPLRAA HHHCHHHHCCCHHHEEEEECCEECCHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MQFFDDSLHPENQDKVVITVAPYGPEWMPADFPEDIPVTMDEHVQKAVDCYNAGATVLHM CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH HVRELDGKGSKRLSKFNELLGRLREAVPDMILQVGGSISFAPEGDGADAKWLSDDTRHML HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHH AELTPKPDQVTVAINTVQMNITELMNRQDIAGTSLNEPALWDAYREMTVPAGPGWVDEHL HHCCCCCCEEEEEEEEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHH RRLQAAGIQPHFQLTGMHALETLERIIRRGVYRGPLNVTWVGIGGGFDGPNPYNFMEFVR HHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHH RCPDGACITFETLMKNVLPINTVAMALGLHPRCGIEDTIIDQKGNRMTSVQQVEQCVRIA HCCCCCEEEHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH RELGRDIATGKEAKAIYKIGVQYDGIDETLAQLGMAPNRRPGQASVPLRAA HHHCHHHHCCCHHHEEEEECCEECCHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA