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The map label for this gene is yfmC [H]

Identifier: 115351588

GI number: 115351588

Start: 1686756

End: 1687793

Strand: Direct

Name: yfmC [H]

Synonym: Bamb_1535

Alternate gene names: 115351588

Gene position: 1686756-1687793 (Clockwise)

Preceding gene: 115351587

Following gene: 115351590

Centisome position: 47.43

GC content: 70.52

Gene sequence:

>1038_bases
GTGACGCGGGCCGGCCGCCGCCATGCGTTGGGCGCACTGGCCGCGCTCGGCGCCGCGTGCTGCGGCGCGCTGGTTGCACC
GGCCGTCGTATTCGCTGACGACGCGCACTGCGGGCCGGGCAGCACGGCGTCGCCAGCGGGCCGCTCGCTCGCCGGCAACC
CCGTCGTATCGCAGGCGAGCGCGACGATGCCCGTGCGGCCGCAACGCGTGGTCGCGCTCGACTTCATGTTCGCGGAAAGC
GTGATCGCGCTCGACCTCGTGCCGGTCGGCATGGCCGATACGGCGTTCTATCCGGGCTGGCTCGGCTACGGGAGCGACCG
GCTCGCGCACGTGACCGACATCGGCTCGCGCCAGGAGCCGGGGCTCGAGGCGATCGCCGCGGTGAAGCCCGATCTCATCA
TCGGCGTCGGCTTCCGGCATGCGCCGATCTTCGCCGCGCTCGACCGGATCGCGCCGACGATCCTGTTCCAGTTCAGCCCG
AACGTATCCGAAGACGGCGTGCCCGTCACGCAGCTCGACTGGATGCGGGAGATCTTCCGCACGATCGGTGCCGTCACCGG
GCGCGACGCGCGCGCGAAAGCGGTGGAAGCGCAACTCGACGCGGGAATCGCCCGCAATGCGGCGCGGCTCAAGGCGGCGG
GGCGCAGTGGTGAGCGCATCGCATTGCTGCAGGATCTCGGTCTGCCCGACCGCTACTGGGCCTATACGGGCAACAGCACG
TCGGCGGGGCTGGCGCGCGCGCTCGGGCTCGAGCCGTGGCCGAAGAAGCCGACGCGGGAAGGCACGCTCTACGTGACGTC
CGCCGATTTGCTTCGGCAGCGCGATCTCGCCGTGCTGTTCGTCACCGCAACGGGGACGGACGTGCCGCTGTCGTCGAAAC
TCGATTCGCCGGTGTGGCGTTTCGTGCCCGCGCTGCGCGACCATCGGATCGCGCTCATCGAGCGCAATATCTGGGGCTTC
GGCGGGCCGATGTCGGCGCTCAAGCTGGCCGACGTGATGACCGATACGATGCTGAAGCTGCCGGCCGTCGTGCGTTGA

Upstream 100 bases:

>100_bases
GCCTGCGCTATGAAATTCCTGGAGAAACGCAACTGTGTGGAAGCTGCCCCCTGCTATTGACGATGGACGATGCGGCGCTG
GCCGGGCAGGACGCGATCCG

Downstream 100 bases:

>100_bases
ACGGCAGCAACGCGTCGTGAGCGGGCGGGGTGGGGTGGTCGGGAACTGCGTTGCCATCCGCATGTTGCCCGAACGGGCTG
CAACATCTCCGTGGCGTCAC

Product: periplasmic binding protein

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate-binding protein [H]

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MTRAGRRHALGALAALGAACCGALVAPAVVFADDAHCGPGSTASPAGRSLAGNPVVSQASATMPVRPQRVVALDFMFAES
VIALDLVPVGMADTAFYPGWLGYGSDRLAHVTDIGSRQEPGLEAIAAVKPDLIIGVGFRHAPIFAALDRIAPTILFQFSP
NVSEDGVPVTQLDWMREIFRTIGAVTGRDARAKAVEAQLDAGIARNAARLKAAGRSGERIALLQDLGLPDRYWAYTGNST
SAGLARALGLEPWPKKPTREGTLYVTSADLLRQRDLAVLFVTATGTDVPLSSKLDSPVWRFVPALRDHRIALIERNIWGF
GGPMSALKLADVMTDTMLKLPAVVR

Sequences:

>Translated_345_residues
MTRAGRRHALGALAALGAACCGALVAPAVVFADDAHCGPGSTASPAGRSLAGNPVVSQASATMPVRPQRVVALDFMFAES
VIALDLVPVGMADTAFYPGWLGYGSDRLAHVTDIGSRQEPGLEAIAAVKPDLIIGVGFRHAPIFAALDRIAPTILFQFSP
NVSEDGVPVTQLDWMREIFRTIGAVTGRDARAKAVEAQLDAGIARNAARLKAAGRSGERIALLQDLGLPDRYWAYTGNST
SAGLARALGLEPWPKKPTREGTLYVTSADLLRQRDLAVLFVTATGTDVPLSSKLDSPVWRFVPALRDHRIALIERNIWGF
GGPMSALKLADVMTDTMLKLPAVVR
>Mature_344_residues
TRAGRRHALGALAALGAACCGALVAPAVVFADDAHCGPGSTASPAGRSLAGNPVVSQASATMPVRPQRVVALDFMFAESV
IALDLVPVGMADTAFYPGWLGYGSDRLAHVTDIGSRQEPGLEAIAAVKPDLIIGVGFRHAPIFAALDRIAPTILFQFSPN
VSEDGVPVTQLDWMREIFRTIGAVTGRDARAKAVEAQLDAGIARNAARLKAAGRSGERIALLQDLGLPDRYWAYTGNSTS
AGLARALGLEPWPKKPTREGTLYVTSADLLRQRDLAVLFVTATGTDVPLSSKLDSPVWRFVPALRDHRIALIERNIWGFG
GPMSALKLADVMTDTMLKLPAVVR

Specific function: Part of the ABC transporter complex yfmCDEF involved in citrate-dependent Fe(3+) import. Binds citrate-dependent Fe(3+) and delivers it to the surface of yfmDE (Probable) [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082411, Length=262, Percent_Identity=26.3358778625954, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786346, Length=276, Percent_Identity=26.4492753623188, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 36569; Mature: 36437

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAGRRHALGALAALGAACCGALVAPAVVFADDAHCGPGSTASPAGRSLAGNPVVSQAS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATMPVRPQRVVALDFMFAESVIALDLVPVGMADTAFYPGWLGYGSDRLAHVTDIGSRQEP
CCCCCCCCCEEEEHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEHHCCCCCCCC
GLEAIAAVKPDLIIGVGFRHAPIFAALDRIAPTILFQFSPNVSEDGVPVTQLDWMREIFR
CHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHH
TIGAVTGRDARAKAVEAQLDAGIARNAARLKAAGRSGERIALLQDLGLPDRYWAYTGNST
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCC
SAGLARALGLEPWPKKPTREGTLYVTSADLLRQRDLAVLFVTATGTDVPLSSKLDSPVWR
HHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHH
FVPALRDHRIALIERNIWGFGGPMSALKLADVMTDTMLKLPAVVR
HHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHCC
>Mature Secondary Structure 
TRAGRRHALGALAALGAACCGALVAPAVVFADDAHCGPGSTASPAGRSLAGNPVVSQAS
CCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATMPVRPQRVVALDFMFAESVIALDLVPVGMADTAFYPGWLGYGSDRLAHVTDIGSRQEP
CCCCCCCCCEEEEHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCEEEHHCCCCCCCC
GLEAIAAVKPDLIIGVGFRHAPIFAALDRIAPTILFQFSPNVSEDGVPVTQLDWMREIFR
CHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHH
TIGAVTGRDARAKAVEAQLDAGIARNAARLKAAGRSGERIALLQDLGLPDRYWAYTGNST
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCCC
SAGLARALGLEPWPKKPTREGTLYVTSADLLRQRDLAVLFVTATGTDVPLSSKLDSPVWR
HHHHHHHHCCCCCCCCCCCCCEEEEECHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHH
FVPALRDHRIALIERNIWGFGGPMSALKLADVMTDTMLKLPAVVR
HHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]