| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yeaH [C]
Identifier: 115351564
GI number: 115351564
Start: 1656731
End: 1657999
Strand: Direct
Name: yeaH [C]
Synonym: Bamb_1511
Alternate gene names: 115351564
Gene position: 1656731-1657999 (Clockwise)
Preceding gene: 115351563
Following gene: 115351565
Centisome position: 46.58
GC content: 62.17
Gene sequence:
>1269_bases GTGCTTCATCAAATCATCGACCGCAGGCTGGCCGGCAAGAACAAGAGCATCGCCAACCGCGAACGCTTTCTGCGTCGCGT CAAGAACTACATTCGTCGTGCCGTCTCCGACGCGGTGCGCGACCGTAGCATCAAGGATATCCAGAGCACGCAAAGCATCA CGATCCCGCGCAAGGACATCGCGGAGCCGAATTTCCGGCACGCGCCGGGCGGGCGTCGTGAATACGTGCACCCGGGCAAC GAGGACTATGTCCGCGGCGACAAGATTCCGCGTCCGCAGGGCGGCTCGGGCGGCGGCGGCAGTCAGGCGAGCAACGAGGG CGAAGGGCAGGACGACTTCGTGTTCGAGCTGTCGCGCGACGAATTCATGCAGTACTTCTTCGACGATCTCGAACTGCCGC GCCTCGTGAAGACGCACCTGCTGACGGTGCCGAGCTGGAAGAACGTGCGCGCGGGCTGGTCGGCGGAAGGCACGCCGAAC AACATCGACGTCGTGCGCTCGCTGAGAAGCGCGCTCGGCCGGCGCATCGCGCTCGGCTCGCCGCTCGTCAACGAATTGCG CGAGCTCGAAGCCCAGCTCGAGGTGATGAAGCTCGACCCCGAAGACCGTCGCGCGGACATCGCGACGCTCGAGGCCGAGA TCCATCACCTGAAGGGGCGCATCTGGCGGATCCCGTTCATCGATCCGTTCGATCTGCGCTACATCAATCGCGTGAAGCAG CCGCAGCCGTCGAGCCAGGCCGTGATGTTCTGCCTGATGGACGTGTCGGGTTCGATGGACGAGCAGCGCAAGGATCTCGC GAAGCGCTTCTTCATCCTGTTGTACCTGTTCCTGAAGCGCAACTACGAGCGCATCGAGGTCGTGTTCATCCGTCACCACA CGCGGGCCGAGGAGGTCGACGAAGACACCTTCTTCCATTCGACCGAAAGCGGCGGCACCGTCGTGTCGAGCGCGCTCGAG CTGATGCGCAAGGTGATGAACGAGCGCTACTCGCCGAGCGAGTGGAACATCTACGGCGCGCAGGCGTCCGACGGCGACAA CTGGACCGACGATTCGCCGAAGTGTCGCAAAATCCTGGAAGAGGATATCCTCACGAAGACGCGCTATTTTGCGTATATCC AGGTTGCCCCGGAAGAGCAGAACCTGTGGCTGGAGTACGCGCAGCTGGCGCTGTCGCAACCGCACCTCGCGATGAAGAAA GCCGAATCGGCTGCCGACATTTACCCGGTGTTTCGCGAATTGTTCGAAAAGCAGGTGGAAATGTCATGA
Upstream 100 bases:
>100_bases TTCGTCCGCGCGGGCGCCCTCAGAGACGCCGCCCGCATGACGGCAGACGGCATGTGCGGCGAGCGTCCCGGCATATCGAC TTTCGAGCGGGAGACCGGGA
Downstream 100 bases:
>100_bases CGACCCGCCATCTGCACAACGAGTCGCGCGGCTACGCGCCGCGCCCTTCCGGCGACGCCACGGCCGGCCCTGCCGCATCG CAGCAAAGCGGCCGGGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 422
Protein sequence:
>422_residues MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDIAEPNFRHAPGGRREYVHPGN EDYVRGDKIPRPQGGSGGGGSQASNEGEGQDDFVFELSRDEFMQYFFDDLELPRLVKTHLLTVPSWKNVRAGWSAEGTPN NIDVVRSLRSALGRRIALGSPLVNELRELEAQLEVMKLDPEDRRADIATLEAEIHHLKGRIWRIPFIDPFDLRYINRVKQ PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVDEDTFFHSTESGGTVVSSALE LMRKVMNERYSPSEWNIYGAQASDGDNWTDDSPKCRKILEEDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHLAMKK AESAADIYPVFRELFEKQVEMS
Sequences:
>Translated_422_residues MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDIAEPNFRHAPGGRREYVHPGN EDYVRGDKIPRPQGGSGGGGSQASNEGEGQDDFVFELSRDEFMQYFFDDLELPRLVKTHLLTVPSWKNVRAGWSAEGTPN NIDVVRSLRSALGRRIALGSPLVNELRELEAQLEVMKLDPEDRRADIATLEAEIHHLKGRIWRIPFIDPFDLRYINRVKQ PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVDEDTFFHSTESGGTVVSSALE LMRKVMNERYSPSEWNIYGAQASDGDNWTDDSPKCRKILEEDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHLAMKK AESAADIYPVFRELFEKQVEMS >Mature_422_residues MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDIAEPNFRHAPGGRREYVHPGN EDYVRGDKIPRPQGGSGGGGSQASNEGEGQDDFVFELSRDEFMQYFFDDLELPRLVKTHLLTVPSWKNVRAGWSAEGTPN NIDVVRSLRSALGRRIALGSPLVNELRELEAQLEVMKLDPEDRRADIATLEAEIHHLKGRIWRIPFIDPFDLRYINRVKQ PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVDEDTFFHSTESGGTVVSSALE LMRKVMNERYSPSEWNIYGAQASDGDNWTDDSPKCRKILEEDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHLAMKK AESAADIYPVFRELFEKQVEMS
Specific function: Unknown
COG id: COG2718
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0229 family [H]
Homologues:
Organism=Escherichia coli, GI1788084, Length=418, Percent_Identity=52.8708133971292, Blast_Score=438, Evalue=1e-124,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006698 [H]
Pfam domain/function: PF04285 DUF444 [H]
EC number: NA
Molecular weight: Translated: 48806; Mature: 48806
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDI CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHC AEPNFRHAPGGRREYVHPGNEDYVRGDKIPRPQGGSGGGGSQASNEGEGQDDFVFELSRD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHH EFMQYFFDDLELPRLVKTHLLTVPSWKNVRAGWSAEGTPNNIDVVRSLRSALGRRIALGS HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCC PLVNELRELEAQLEVMKLDPEDRRADIATLEAEIHHLKGRIWRIPFIDPFDLRYINRVKQ HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCC PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVD CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCC EDTFFHSTESGGTVVSSALELMRKVMNERYSPSEWNIYGAQASDGDNWTDDSPKCRKILE CHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHH EDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHLAMKKAESAADIYPVFRELFEKQVE HHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC MS CC >Mature Secondary Structure MLHQIIDRRLAGKNKSIANRERFLRRVKNYIRRAVSDAVRDRSIKDIQSTQSITIPRKDI CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHC AEPNFRHAPGGRREYVHPGNEDYVRGDKIPRPQGGSGGGGSQASNEGEGQDDFVFELSRD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHH EFMQYFFDDLELPRLVKTHLLTVPSWKNVRAGWSAEGTPNNIDVVRSLRSALGRRIALGS HHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEECCCC PLVNELRELEAQLEVMKLDPEDRRADIATLEAEIHHLKGRIWRIPFIDPFDLRYINRVKQ HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHCC PQPSSQAVMFCLMDVSGSMDEQRKDLAKRFFILLYLFLKRNYERIEVVFIRHHTRAEEVD CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHCC EDTFFHSTESGGTVVSSALELMRKVMNERYSPSEWNIYGAQASDGDNWTDDSPKCRKILE CHHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHH EDILTKTRYFAYIQVAPEEQNLWLEYAQLALSQPHLAMKKAESAADIYPVFRELFEKQVE HHHHHHHEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC MS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA