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The map label for this gene is alsB [H]

Identifier: 115351556

GI number: 115351556

Start: 1646380

End: 1647330

Strand: Direct

Name: alsB [H]

Synonym: Bamb_1503

Alternate gene names: 115351556

Gene position: 1646380-1647330 (Clockwise)

Preceding gene: 115351554

Following gene: 115351557

Centisome position: 46.29

GC content: 65.4

Gene sequence:

>951_bases
ATGAATGTCCTCTTTCGCCGTCGTTTCCTGACCGCCGCGCTTGCCGCCGTCGCGGTCGCCGCCGCACCGGCCGTCCACGC
GCAAGCGGGGGCCAAGCCGAAGGTCGCGCTCGTGATGAAGTCGCTCGCCAACGAGTTCTTCCTGACGATGGAAACCGGCG
CGAAGGAATACCAGAAGCACAACGCCGGCCAGTTCGACCTGATCACGAACGGCATCAAGGACGAGACCGACACCGCGAAC
CAGATCCGCATCGTCGAGCAGATGATCGTGTCGAAGGTCGATGCGATCGTGCTCGCGCCGGCCGATTCGAAGGCGCTCGT
GCCGGTCGTGAAGAAGGCGGTCGACGCGGGCATCATCGTCGTGAACATCGACAACCGGCTCGACCCCGACGTGCTGAAGT
CGAAGAACCTGAACGTGCCGTTCGTCGGCCCCGACAACCGCAAGGGCGCGCGCAAGATCGGCGACTACCTCGCGAAGCGG
CTGAAGGCGGGCGACCAGGTCGGTATCCTCGAAGGCGTGTCGACGACGACCAACGCGCAGCAGCGCACGGCCGGCTTCCA
GGATGCGATGAAGGCGGGCGGGATGAAGGTCGTGTCGGTGCAGTCGGGCGAGTGGGAGATCGACAAGGGCAATGCGGTCG
CGTCCGCGATGCTCAACGAATACCCGAACCTGCGCGCGCTGCTGTGCGGCAACGACAACATGGCGATCGGCGCGGTGTCG
GCGGTGCGGGCCGCGGGCAAGCAGGGCAAGGTGTTCGTGGTCGGCTACGACAACATCAACGCGATCAAGCCGATGCTGAA
GGACGGCCGCGTGCTCGCGACCGCCGACCAGTACGCGGCGAAGCAGGCCGTGTTCGGCATCGACACGGCGCTCAAGGCGA
TTGCCGAGCATCGCAAGCAGGCCGACATGACCGGTGTGGTCGAGACGCCGGTGGATCTCGTGACGAAGTAA

Upstream 100 bases:

>100_bases
CGATGGCCACTGCCCGGGTAATTGGGCGCAAACGTTTGCTCGCATTAAAACAACAACCAGACACCAATCGGCCCCACGGG
CCAGTCGCCAGGAGATGTGT

Downstream 100 bases:

>100_bases
CGCCGCCCCGTCGCGGCCGCCGCCCTCAAGAATCCGGGCCGGCGGCCGTTATACGGAGTGAGCGCGATCACGGCCACTGC
ATGCACATGCACTTGTGAGC

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: ALBP [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNVLFRRRFLTAALAAVAVAAAPAVHAQAGAKPKVALVMKSLANEFFLTMETGAKEYQKHNAGQFDLITNGIKDETDTAN
QIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKNLNVPFVGPDNRKGARKIGDYLAKR
LKAGDQVGILEGVSTTTNAQQRTAGFQDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLRALLCGNDNMAIGAVS
AVRAAGKQGKVFVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKAIAEHRKQADMTGVVETPVDLVTK

Sequences:

>Translated_316_residues
MNVLFRRRFLTAALAAVAVAAAPAVHAQAGAKPKVALVMKSLANEFFLTMETGAKEYQKHNAGQFDLITNGIKDETDTAN
QIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKNLNVPFVGPDNRKGARKIGDYLAKR
LKAGDQVGILEGVSTTTNAQQRTAGFQDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLRALLCGNDNMAIGAVS
AVRAAGKQGKVFVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKAIAEHRKQADMTGVVETPVDLVTK
>Mature_316_residues
MNVLFRRRFLTAALAAVAVAAAPAVHAQAGAKPKVALVMKSLANEFFLTMETGAKEYQKHNAGQFDLITNGIKDETDTAN
QIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKNLNVPFVGPDNRKGARKIGDYLAKR
LKAGDQVGILEGVSTTTNAQQRTAGFQDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLRALLCGNDNMAIGAVS
AVRAAGKQGKVFVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKAIAEHRKQADMTGVVETPVDLVTK

Specific function: Part of the binding-protein-dependent transport system AlsBAC for D-allose [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790526, Length=266, Percent_Identity=33.4586466165414, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790192, Length=297, Percent_Identity=31.986531986532, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790674, Length=204, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788898, Length=281, Percent_Identity=26.6903914590747, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33566; Mature: 33566

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLFRRRFLTAALAAVAVAAAPAVHAQAGAKPKVALVMKSLANEFFLTMETGAKEYQKH
CCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHEEEEECCCHHHHHHC
NAGQFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIV
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHCCCEEE
VNIDNRLDPDVLKSKNLNVPFVGPDNRKGARKIGDYLAKRLKAGDQVGILEGVSTTTNAQ
EEECCCCCHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
QRTAGFQDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLRALLCGNDNMAIGAVS
HHHCCHHHHHHHCCEEEEEEECCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCEEHHHH
AVRAAGKQGKVFVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKAIAEHRKQ
HHHHCCCCCCEEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
ADMTGVVETPVDLVTK
CCCCCCCCCCHHHHCC
>Mature Secondary Structure
MNVLFRRRFLTAALAAVAVAAAPAVHAQAGAKPKVALVMKSLANEFFLTMETGAKEYQKH
CCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHEEEEECCCHHHHHHC
NAGQFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIV
CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHCCCEEE
VNIDNRLDPDVLKSKNLNVPFVGPDNRKGARKIGDYLAKRLKAGDQVGILEGVSTTTNAQ
EEECCCCCHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
QRTAGFQDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLRALLCGNDNMAIGAVS
HHHCCHHHHHHHCCEEEEEEECCCEEECCCHHHHHHHHHCCCCCEEEEECCCCCEEHHHH
AVRAAGKQGKVFVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKAIAEHRKQ
HHHHCCCCCCEEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
ADMTGVVETPVDLVTK
CCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 8576032; 9401019; 10064713 [H]