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The map label for this gene is cbl [H]

Identifier: 115351554

GI number: 115351554

Start: 1644625

End: 1645551

Strand: Direct

Name: cbl [H]

Synonym: Bamb_1501

Alternate gene names: 115351554

Gene position: 1644625-1645551 (Clockwise)

Preceding gene: 115351553

Following gene: 115351556

Centisome position: 46.24

GC content: 65.59

Gene sequence:

>927_bases
ATGAATTTTCAGCAATTGCGTTTCGTGCGCGAAGCCGTGCGGCAGAACATGAATCTGACGGAAGTCGCGAACGTGCTGTA
CACGTCGCAGTCGGGCGTGTCGAAGCAGATCAAGGATCTCGAGGACGAACTGGGCGTCGACATCTTCATCCGGCGCGGCA
AGCGGCTCACGGGGCTCACGGAGCCCGGCAAGGCCGTGCACCAGTTGATCGAGCGGATGCTGCTCGATGCCGAGAACCTG
CGCCGCGTCGCGCGCCAGTTCGCCGACCAGGACAGCGGCCACCTCGTCGTCGCGACCACGCACACGCAGGCGCGCTACGC
GCTGCCGAAGGTGATCCGGCAGTTCACCGACGTGTTCCCGAAGGTGCATCTCGCGCTGCGCCAGGGCAGCCCGCAGCAGA
TCGCGCAGATGATCCTCAATGGCGAAGCCGATCTCGGCATCTCGACCGAGGCGCTCGACCGCTATCCGGACATCGTGACG
TTCCCGTGCTATTCGTGGCACCACACGGTGGTCGTGCCGAAGGGGCATCCGCTCGTCGGCCGCGAGAACCTGACGCTCGA
CGAAATCGCCGAGTATCCGATCATCACGTATGACCAGGACTTCACGGGCCGCTCGCACATCGACCAGGCGTTCACGCAGG
CCGGCGCGGTGCCCGACGTCGTGCTGACCGCGATCGACGCGGACGTGATCAAGACCTACGTCGAGCTCGGGATGGGGATC
GGCGTCGTCGCGGCGATGGCCTTCGATCCGCAGCGCGACACCGGCCTCGTCGCGCTCGACACGCAGCACCTGTTCGAGGC
GAGCACGACGCGGGTCGGGCTGCGCAAGGGCGCATTCCTGCGCGCGTATGCGTACCGGCTGATCGAGATGTTCGCGCCGC
AACTGAACGAAGCGGAAATCGCCGCGCAGCTGCGCGAAACGGTCTGA

Upstream 100 bases:

>100_bases
CGGGTATTTCCCGCACACTGACGCCGAACCCGGTAAAGAGAAGAGGGCGGATACCGCTCCGGAGCGACATTCGAACAACG
ACAGCCTAAGAGGCATACCC

Downstream 100 bases:

>100_bases
CGGCGGGGCGGTGTCCCGGGGGGCGCGGCGAGCGCCCGCCGGACGGGCTGCGCGATGGGTGACATGACGGTGGTTTTCGC
GTCGTCATGTCATGGCGAGC

Product: transcriptional regulator CysB-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDELGVDIFIRRGKRLTGLTEPGKAVHQLIERMLLDAENL
RRVARQFADQDSGHLVVATTHTQARYALPKVIRQFTDVFPKVHLALRQGSPQQIAQMILNGEADLGISTEALDRYPDIVT
FPCYSWHHTVVVPKGHPLVGRENLTLDEIAEYPIITYDQDFTGRSHIDQAFTQAGAVPDVVLTAIDADVIKTYVELGMGI
GVVAAMAFDPQRDTGLVALDTQHLFEASTTRVGLRKGAFLRAYAYRLIEMFAPQLNEAEIAAQLRETV

Sequences:

>Translated_308_residues
MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDELGVDIFIRRGKRLTGLTEPGKAVHQLIERMLLDAENL
RRVARQFADQDSGHLVVATTHTQARYALPKVIRQFTDVFPKVHLALRQGSPQQIAQMILNGEADLGISTEALDRYPDIVT
FPCYSWHHTVVVPKGHPLVGRENLTLDEIAEYPIITYDQDFTGRSHIDQAFTQAGAVPDVVLTAIDADVIKTYVELGMGI
GVVAAMAFDPQRDTGLVALDTQHLFEASTTRVGLRKGAFLRAYAYRLIEMFAPQLNEAEIAAQLRETV
>Mature_308_residues
MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDELGVDIFIRRGKRLTGLTEPGKAVHQLIERMLLDAENL
RRVARQFADQDSGHLVVATTHTQARYALPKVIRQFTDVFPKVHLALRQGSPQQIAQMILNGEADLGISTEALDRYPDIVT
FPCYSWHHTVVVPKGHPLVGRENLTLDEIAEYPIITYDQDFTGRSHIDQAFTQAGAVPDVVLTAIDADVIKTYVELGMGI
GVVAAMAFDPQRDTGLVALDTQHLFEASTTRVGLRKGAFLRAYAYRLIEMFAPQLNEAEIAAQLRETV

Specific function: May be an accessory regulatory protein within the cys regulon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788296, Length=307, Percent_Identity=53.7459283387622, Blast_Score=348, Evalue=2e-97,
Organism=Escherichia coli, GI1787530, Length=296, Percent_Identity=49.3243243243243, Blast_Score=313, Evalue=1e-86,
Organism=Escherichia coli, GI157672245, Length=225, Percent_Identity=30.2222222222222, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788887, Length=259, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790399, Length=290, Percent_Identity=24.4827586206897, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788481, Length=258, Percent_Identity=25.1937984496124, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI2367136, Length=241, Percent_Identity=24.0663900414938, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789204, Length=246, Percent_Identity=25.2032520325203, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787806, Length=243, Percent_Identity=22.6337448559671, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082132, Length=122, Percent_Identity=34.4262295081967, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=189, Percent_Identity=26.984126984127, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=230, Percent_Identity=25.6521739130435, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790262, Length=256, Percent_Identity=23.4375, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34443; Mature: 34443

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDELGVDIFIRRGKRLTGLT
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC
EPGKAVHQLIERMLLDAENLRRVARQFADQDSGHLVVATTHTQARYALPKVIRQFTDVFP
CCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
KVHLALRQGSPQQIAQMILNGEADLGISTEALDRYPDIVTFPCYSWHHTVVVPKGHPLVG
HHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCCCCEEEEEECCCCCCC
RENLTLDEIAEYPIITYDQDFTGRSHIDQAFTQAGAVPDVVLTAIDADVIKTYVELGMGI
CCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
GVVAAMAFDPQRDTGLVALDTQHLFEASTTRVGLRKGAFLRAYAYRLIEMFAPQLNEAEI
HHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHH
AAQLRETV
HHHHHHCC
>Mature Secondary Structure
MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDELGVDIFIRRGKRLTGLT
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC
EPGKAVHQLIERMLLDAENLRRVARQFADQDSGHLVVATTHTQARYALPKVIRQFTDVFP
CCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH
KVHLALRQGSPQQIAQMILNGEADLGISTEALDRYPDIVTFPCYSWHHTVVVPKGHPLVG
HHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCCCCEEEEEECCCCCCC
RENLTLDEIAEYPIITYDQDFTGRSHIDQAFTQAGAVPDVVLTAIDADVIKTYVELGMGI
CCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH
GVVAAMAFDPQRDTGLVALDTQHLFEASTTRVGLRKGAFLRAYAYRLIEMFAPQLNEAEI
HHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHH
AAQLRETV
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8529872; 9097040; 9278503 [H]