| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351512
Identifier: 115351512
GI number: 115351512
Start: 1608841
End: 1609338
Strand: Direct
Name: 115351512
Synonym: Bamb_1459
Alternate gene names: NA
Gene position: 1608841-1609338 (Clockwise)
Preceding gene: 115351505
Following gene: 115351513
Centisome position: 45.24
GC content: 69.68
Gene sequence:
>498_bases ATGGACATCGCTCACGATCTGCAATCGATCGGCGCGCAGGAACAGGCGCTCGTGTTTCCCCATTTCGACCCGGCCCGCGC GTGGGCGCTCGGCAACCGCATGCATGCGCTCGCGACGGCGCGCGGTCACGCGATCGCAATCGACATCGTCACGTTCGGCC AGCCGCTGTTCTACGCGGCGCTCGCCGGCGCGACGCCCGACAACGCCGACTGGGTGCGCCGCAAGCGTAACGTCGTCGCG CATTTTCGCCGCAGTTCGTATGCGATCGGCCTGCGCATGCAGCAGGCCGGCGCGTCGCTCGCGGACAAGCACGGGCTGCC CATCTCCGACTATTCGCCGCACGGCGGTTCGTTTCCGCTGACCGTCGCGGGGGCCGGCGTGATCGGCTCGATCACCGCGT CGGGGCTGCCGCAGCGCGCGGATCACGAGTTCGTCGTCGAAGCGCTGTGCGCCGAGCTCGGGCAGGACTACGCCGCGCTG GCGCTTGCGAGGAGCTGA
Upstream 100 bases:
>100_bases GGTTTGCTCGTGTCGTTCATTCCTGCAGCGAAGCCGTGCGCGATCGCGTCGGTGCCGTTGCAACGCTCACTACTGTTGTT ACTACTGCCTCGACGGATTC
Downstream 100 bases:
>100_bases GCGATGCAGCTTCCGGGTTACGCATGGCTCGCGATCGCGATCGTCGCGGAAGTGGTCGGCACGTCCGCGCTGCGCGCGGC GGACGGCTTCACGCGCTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 165; Mature: 165
Protein sequence:
>165_residues MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAALAGATPDNADWVRRKRNVVA HFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPLTVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAAL ALARS
Sequences:
>Translated_165_residues MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAALAGATPDNADWVRRKRNVVA HFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPLTVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAAL ALARS >Mature_165_residues MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAALAGATPDNADWVRRKRNVVA HFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPLTVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAAL ALARS
Specific function: Unknown
COG id: COG4702
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0303 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005624 - InterPro: IPR010371 [H]
Pfam domain/function: PF03928 DUF336 [H]
EC number: NA
Molecular weight: Translated: 17497; Mature: 17497
Theoretical pI: Translated: 7.29; Mature: 7.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAA CCHHHHHHHCCCCCCEEEECCCCHHHHHHHCCHHHHHHHCCCCEEEEEEEECCCHHHHHH LAGATPDNADWVRRKRNVVAHFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPL HHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCHHHHCCCCCCCCCCCCCCCCE TVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAALALARS EEECCCEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHEECC >Mature Secondary Structure MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAA CCHHHHHHHCCCCCCEEEECCCCHHHHHHHCCHHHHHHHCCCCEEEEEEEECCCHHHHHH LAGATPDNADWVRRKRNVVAHFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPL HHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCHHHHCCCCCCCCCCCCCCCCE TVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAALALARS EEECCCEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA