Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351473

Identifier: 115351473

GI number: 115351473

Start: 1564601

End: 1565227

Strand: Direct

Name: 115351473

Synonym: Bamb_1420

Alternate gene names: NA

Gene position: 1564601-1565227 (Clockwise)

Preceding gene: 115351472

Following gene: 115351474

Centisome position: 43.99

GC content: 64.43

Gene sequence:

>627_bases
ATGGCACTCGGCAACGACGTTCATCTCATTCCCGTGCGGCTCGACGCATTGCGTCCGACGCAAATGACCGTCGGCTATCG
CGAAGTGAAAGCGAAGCGCAGGCACTGGAAAGCGCTCGACAAGCGTGCGCGCAAGGCCGCGATCGACTCTCACTGGTTTC
CGGCCGTCCTCGGCCCGGGCGGCCTTTACTACATCACCGATCATCACCATCTCGGCCTCGCGCTGATCGAGGAAGGGCAG
ACGCGCGTGAACGCGATGCTGCTGAAGGATCTGTCCTGGCTCGAGGACACGATCTTCTGGCGGATGATGGAACACAACCA
GTGGGTGCATCCGTTCGGTCCGGACGGCTCGCGTCGCGACTACGCGAACCTGCCGAAGGTACTGACGGGGCTCGAGGACG
ATCCGTACCGCAGCCTCGCGGGCGAACTGCGCACGGCGGGCGGCTATGCGAAGGATGCGACGCCGTTCAGCGAATTCCTG
TGGGCCGACTACCTGCGCCAGCACGTGACGCTCGACCAGATCCGCAAGAACTTCTCGAAGGCGCTGGACCTCTCGCTGCG
CCGCGCACACGACCAGGACGCGCGCTATCTGCCCGGCTGGTCGGGTGTCATCGCCGCCAAACCCTGA

Upstream 100 bases:

>100_bases
TTGGCGAAGGTTAAGCGCAGGCTTATCCTCGTCGCGAGGGATTAGCAGTTCGCACGATCAGGAGTATCGTTGCCGGAAAT
TCCCAACATGGGGTACGACC

Downstream 100 bases:

>100_bases
CATGCGCACGGCGCCTATCGCCTCATGACGACCGTCTCGCCCCGTCCGGATGCCGGCCCGCAGCATCCCGAGCATTTCGC
CGCACTCGATGCGGCAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: ParB-Like Nuclease Superfamily

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MALGNDVHLIPVRLDALRPTQMTVGYREVKAKRRHWKALDKRARKAAIDSHWFPAVLGPGGLYYITDHHHLGLALIEEGQ
TRVNAMLLKDLSWLEDTIFWRMMEHNQWVHPFGPDGSRRDYANLPKVLTGLEDDPYRSLAGELRTAGGYAKDATPFSEFL
WADYLRQHVTLDQIRKNFSKALDLSLRRAHDQDARYLPGWSGVIAAKP

Sequences:

>Translated_208_residues
MALGNDVHLIPVRLDALRPTQMTVGYREVKAKRRHWKALDKRARKAAIDSHWFPAVLGPGGLYYITDHHHLGLALIEEGQ
TRVNAMLLKDLSWLEDTIFWRMMEHNQWVHPFGPDGSRRDYANLPKVLTGLEDDPYRSLAGELRTAGGYAKDATPFSEFL
WADYLRQHVTLDQIRKNFSKALDLSLRRAHDQDARYLPGWSGVIAAKP
>Mature_207_residues
ALGNDVHLIPVRLDALRPTQMTVGYREVKAKRRHWKALDKRARKAAIDSHWFPAVLGPGGLYYITDHHHLGLALIEEGQT
RVNAMLLKDLSWLEDTIFWRMMEHNQWVHPFGPDGSRRDYANLPKVLTGLEDDPYRSLAGELRTAGGYAKDATPFSEFLW
ADYLRQHVTLDQIRKNFSKALDLSLRRAHDQDARYLPGWSGVIAAKP

Specific function: Unknown

COG id: COG4318

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23837; Mature: 23705

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALGNDVHLIPVRLDALRPTQMTVGYREVKAKRRHWKALDKRARKAAIDSHWFPAVLGPG
CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCC
GLYYITDHHHLGLALIEEGQTRVNAMLLKDLSWLEDTIFWRMMEHNQWVHPFGPDGSRRD
CEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
YANLPKVLTGLEDDPYRSLAGELRTAGGYAKDATPFSEFLWADYLRQHVTLDQIRKNFSK
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
ALDLSLRRAHDQDARYLPGWSGVIAAKP
HHHHHHHHHCCCCCCCCCCCCCEEECCC
>Mature Secondary Structure 
ALGNDVHLIPVRLDALRPTQMTVGYREVKAKRRHWKALDKRARKAAIDSHWFPAVLGPG
CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCC
GLYYITDHHHLGLALIEEGQTRVNAMLLKDLSWLEDTIFWRMMEHNQWVHPFGPDGSRRD
CEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
YANLPKVLTGLEDDPYRSLAGELRTAGGYAKDATPFSEFLWADYLRQHVTLDQIRKNFSK
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
ALDLSLRRAHDQDARYLPGWSGVIAAKP
HHHHHHHHHCCCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA