Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351463

Identifier: 115351463

GI number: 115351463

Start: 1553150

End: 1555015

Strand: Direct

Name: 115351463

Synonym: Bamb_1410

Alternate gene names: NA

Gene position: 1553150-1555015 (Clockwise)

Preceding gene: 115351462

Following gene: 115351464

Centisome position: 43.67

GC content: 65.27

Gene sequence:

>1866_bases
ATGATCGCGGCTCGCCATTCATCGAATCGAGTGACCGGACGGGGGCGCGCCGCGCCGCGGCGACAGCGCGGCGCGGTCGT
CGTCATGGCGTCCGTATGGATACTGCTGGCGATGGTCATTCTCGGTTCGGTCGACATCGGCAACGTCTTCCTGGCCCGCC
GCGACATGCAGCGCGTCGCCGATCTCGCGGCGCTGGCGGCGGTCCAGCGGCTGGACGATGCGTGTGCGAACGTGACGAGC
GTGGCCACGAGCAACGCGTCGACGAACGGCTTTTCCGTCGGCGGCACCACGACCCTGTCGGCCGATTGCGGTTATTGGGC
ACCGACTGCCACCGGGACGTCGAGCAGTTTCTATTCGTCGAAGACATCGGTTCCCATGCTCACCCAGCTGAATGCGGTCC
GGGTCACGATTTCCAAGTCGATGCCGTATTTCTTCTTCGGACCGACGCGCACCGTGATCGCCACGTCGACCGCAAAGGCG
ACCAACATCGACACGTTCTCGATCGGCGCGACGCTGGCCGCCGTCGGTGGAGTCGGCTGCTCGGGTGTGCCGACCGGCAA
TCCCGGTCTGGTGAATGCGCTGCTGGGCGCGCTGCTGCAAGGCCAGGGCGGTACGCCGCTGACGCTCAATCTTGCGTCCT
ATCAGGGCCTTGCCTGCGCGAACGTCAAGCTGGGTGATATCGCCGTCGCACTGCAGTCGCTGTCGGTGGGCAACGGGACG
ATGGGCGGGCTGGTGAATGCGCAGGCATCGGTCGGCACGCTGCTCAAGGCGACGGTGGCGGCAGTCGGGAAGACGACCAC
CCTCGGCACCGCTCTGCAGTCGAGTGCTACCGGCGCACTGAACAACATCCTCAACCTGAGCCTGCTCAGCAATACCAGCA
TCAACGTCGCGCGCCTGACCGGACAGGGTGCCACGTCGCTGCTCACGCTCGGCCTCGCGAATGCGGAGGCGGCGGCCGAT
GCGACCGTGAACGTGCTCGATCTCGTGATGGCGATGGCGCAGATCTCGCAGAGCGGCAAGCCGGGCGTCGTAATCGGCGC
GAATGTGCCGCTTGCGCTGCCGAACGGCACTTCCGTATCGATCGCGCAGTTGCAGGTGCAGGTCATCAGCCCGCCGACCA
TCGCGGTGGGCGAAGGCGGGAAGGACGCGACCGGCGCGTGGCGCACGGTCGCGACGAATGCGCAGATCGGCGTCTATCTC
CTCGTCGACCTCGGTGTGAATCCGCTGCCGGTCGTGGCGTCCGCGAACGTGTATCTGCCGCTTTACGTGCAGCTCGGCGC
GGGCAGCGCAACGCTGTTGTCGACCAATTGCCGGACCTCGCCGAATTCGGCCACGATCAGCGCGCAACCGAGCGTCGCGA
ATCTATGTATCGGCCAGCCGCCGCTCAGCGGCAACCTGCTCAACCTGCCGGCGACCTACAGCTGCTCGACGCCCGCCACG
GTGCTAGACGTGAAGGTACTGGCGGGCGCGGTCGAGGTGTCCGCGACCGTCTCCAATGTGTCGGTGGCGCTGGCCGGCAA
CACGGCGACCAATACGTTTTACGGGCGGGGCGGAAGCGATCCGTCCTACTACTGGACCACCAACACGAATGCGCTGGGTT
CAGCCGTGAGCAATGCATTGGCGGGCCTGAGCTCGGCCACGATCACACCGAAAGTGGAGCTGCTGTTCGGATTCGTCACC
GTCCCGCTCACAGCGGATTTTGTTCCGAAACTGCTAGGGGTCCTGACCGGTGTTTTGAGCCCGCTGTTGAGCGCGCTGGA
CGGTATCATCGATCCACTGCTCGATCTGCTTGGCGTCCAGCTCGGTGCCGCCACGGTACATCAGATGTCGCTGACCTGCG
GCGCTGCGCAAACTGTCAGTAATTAG

Upstream 100 bases:

>100_bases
AGCACAAGATTCCGGAGTCGATGGGGTCGCCGGTCAACGCGAACGGCAGCGGCGGGGCCGGCGGACAGCATTCCATGCAA
TCGTATTGAGCGGGACGGTA

Downstream 100 bases:

>100_bases
AGAAGCAAGACCACCCGATGAGAAACACGCCCGCAATCGCAGAACTCGATCTGTACGTCTGGGAAGGCAAGGCGGACATT
GTCGACCGCGTTGCCCGCTG

Product: membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVADLAALAAVQRLDDACANVTS
VATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSSKTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKA
TNIDTFSIGATLAAVGGVGCSGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT
MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLTGQGATSLLTLGLANAEAAAD
ATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVSIAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYL
LVDLGVNPLPVVASANVYLPLYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT
VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNALAGLSSATITPKVELLFGFVT
VPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQLGAATVHQMSLTCGAAQTVSN

Sequences:

>Translated_621_residues
MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVADLAALAAVQRLDDACANVTS
VATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSSKTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKA
TNIDTFSIGATLAAVGGVGCSGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT
MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLTGQGATSLLTLGLANAEAAAD
ATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVSIAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYL
LVDLGVNPLPVVASANVYLPLYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT
VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNALAGLSSATITPKVELLFGFVT
VPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQLGAATVHQMSLTCGAAQTVSN
>Mature_621_residues
MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVADLAALAAVQRLDDACANVTS
VATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSSKTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKA
TNIDTFSIGATLAAVGGVGCSGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT
MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLTGQGATSLLTLGLANAEAAAD
ATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVSIAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYL
LVDLGVNPLPVVASANVYLPLYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT
VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNALAGLSSATITPKVELLFGFVT
VPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQLGAATVHQMSLTCGAAQTVSN

Specific function: Unknown

COG id: COG4655

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62229; Mature: 62229

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVA
CCCCCCCCCCCCCCCCCCCCHHCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DLAALAAVQRLDDACANVTSVATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCC
KTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKATNIDTFSIGATLAAVGGVGC
CCCCCHHCCCCEEEEEEECCCCEEEECCCCEEEEECCCCCCCCCEEEHHHHHHHHCCCCC
SGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT
CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCEEHHHHHHHHHHCCCCCC
MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLT
CCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHEEEEEECCCCEEEEEEE
GQGATSLLTLGLANAEAAADATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVS
CCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCEEE
IAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYLLVDLGVNPLPVVASANVYLP
EEEEEEEEECCCEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCEEEECCEEEE
LYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT
EEEEECCCCEEEEECCCCCCCCCEEEEECCCHHHEEECCCCCCCCEECCCCEECCCCCCH
VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNAL
HEEHHHHHHHEEEEEEEEEEEEEEECCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHH
AGLSSATITPKVELLFGFVTVPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQ
HCCCCCCCCCCCEEEEEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGAATVHQMSLTCGAAQTVSN
HCHHHHHHHHEECCCHHHCCC
>Mature Secondary Structure
MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVA
CCCCCCCCCCCCCCCCCCCCHHCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
DLAALAAVQRLDDACANVTSVATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSS
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCC
KTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKATNIDTFSIGATLAAVGGVGC
CCCCCHHCCCCEEEEEEECCCCEEEECCCCEEEEECCCCCCCCCEEEHHHHHHHHCCCCC
SGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT
CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCEEHHHHHHHHHHCCCCCC
MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLT
CCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHEEEEEECCCCEEEEEEE
GQGATSLLTLGLANAEAAADATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVS
CCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCEEE
IAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYLLVDLGVNPLPVVASANVYLP
EEEEEEEEECCCEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCEEEECCEEEE
LYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT
EEEEECCCCEEEEECCCCCCCCCEEEEECCCHHHEEECCCCCCCCEECCCCEECCCCCCH
VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNAL
HEEHHHHHHHEEEEEEEEEEEEEEECCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHH
AGLSSATITPKVELLFGFVTVPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQ
HCCCCCCCCCCCEEEEEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGAATVHQMSLTCGAAQTVSN
HCHHHHHHHHEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA