| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351463
Identifier: 115351463
GI number: 115351463
Start: 1553150
End: 1555015
Strand: Direct
Name: 115351463
Synonym: Bamb_1410
Alternate gene names: NA
Gene position: 1553150-1555015 (Clockwise)
Preceding gene: 115351462
Following gene: 115351464
Centisome position: 43.67
GC content: 65.27
Gene sequence:
>1866_bases ATGATCGCGGCTCGCCATTCATCGAATCGAGTGACCGGACGGGGGCGCGCCGCGCCGCGGCGACAGCGCGGCGCGGTCGT CGTCATGGCGTCCGTATGGATACTGCTGGCGATGGTCATTCTCGGTTCGGTCGACATCGGCAACGTCTTCCTGGCCCGCC GCGACATGCAGCGCGTCGCCGATCTCGCGGCGCTGGCGGCGGTCCAGCGGCTGGACGATGCGTGTGCGAACGTGACGAGC GTGGCCACGAGCAACGCGTCGACGAACGGCTTTTCCGTCGGCGGCACCACGACCCTGTCGGCCGATTGCGGTTATTGGGC ACCGACTGCCACCGGGACGTCGAGCAGTTTCTATTCGTCGAAGACATCGGTTCCCATGCTCACCCAGCTGAATGCGGTCC GGGTCACGATTTCCAAGTCGATGCCGTATTTCTTCTTCGGACCGACGCGCACCGTGATCGCCACGTCGACCGCAAAGGCG ACCAACATCGACACGTTCTCGATCGGCGCGACGCTGGCCGCCGTCGGTGGAGTCGGCTGCTCGGGTGTGCCGACCGGCAA TCCCGGTCTGGTGAATGCGCTGCTGGGCGCGCTGCTGCAAGGCCAGGGCGGTACGCCGCTGACGCTCAATCTTGCGTCCT ATCAGGGCCTTGCCTGCGCGAACGTCAAGCTGGGTGATATCGCCGTCGCACTGCAGTCGCTGTCGGTGGGCAACGGGACG ATGGGCGGGCTGGTGAATGCGCAGGCATCGGTCGGCACGCTGCTCAAGGCGACGGTGGCGGCAGTCGGGAAGACGACCAC CCTCGGCACCGCTCTGCAGTCGAGTGCTACCGGCGCACTGAACAACATCCTCAACCTGAGCCTGCTCAGCAATACCAGCA TCAACGTCGCGCGCCTGACCGGACAGGGTGCCACGTCGCTGCTCACGCTCGGCCTCGCGAATGCGGAGGCGGCGGCCGAT GCGACCGTGAACGTGCTCGATCTCGTGATGGCGATGGCGCAGATCTCGCAGAGCGGCAAGCCGGGCGTCGTAATCGGCGC GAATGTGCCGCTTGCGCTGCCGAACGGCACTTCCGTATCGATCGCGCAGTTGCAGGTGCAGGTCATCAGCCCGCCGACCA TCGCGGTGGGCGAAGGCGGGAAGGACGCGACCGGCGCGTGGCGCACGGTCGCGACGAATGCGCAGATCGGCGTCTATCTC CTCGTCGACCTCGGTGTGAATCCGCTGCCGGTCGTGGCGTCCGCGAACGTGTATCTGCCGCTTTACGTGCAGCTCGGCGC GGGCAGCGCAACGCTGTTGTCGACCAATTGCCGGACCTCGCCGAATTCGGCCACGATCAGCGCGCAACCGAGCGTCGCGA ATCTATGTATCGGCCAGCCGCCGCTCAGCGGCAACCTGCTCAACCTGCCGGCGACCTACAGCTGCTCGACGCCCGCCACG GTGCTAGACGTGAAGGTACTGGCGGGCGCGGTCGAGGTGTCCGCGACCGTCTCCAATGTGTCGGTGGCGCTGGCCGGCAA CACGGCGACCAATACGTTTTACGGGCGGGGCGGAAGCGATCCGTCCTACTACTGGACCACCAACACGAATGCGCTGGGTT CAGCCGTGAGCAATGCATTGGCGGGCCTGAGCTCGGCCACGATCACACCGAAAGTGGAGCTGCTGTTCGGATTCGTCACC GTCCCGCTCACAGCGGATTTTGTTCCGAAACTGCTAGGGGTCCTGACCGGTGTTTTGAGCCCGCTGTTGAGCGCGCTGGA CGGTATCATCGATCCACTGCTCGATCTGCTTGGCGTCCAGCTCGGTGCCGCCACGGTACATCAGATGTCGCTGACCTGCG GCGCTGCGCAAACTGTCAGTAATTAG
Upstream 100 bases:
>100_bases AGCACAAGATTCCGGAGTCGATGGGGTCGCCGGTCAACGCGAACGGCAGCGGCGGGGCCGGCGGACAGCATTCCATGCAA TCGTATTGAGCGGGACGGTA
Downstream 100 bases:
>100_bases AGAAGCAAGACCACCCGATGAGAAACACGCCCGCAATCGCAGAACTCGATCTGTACGTCTGGGAAGGCAAGGCGGACATT GTCGACCGCGTTGCCCGCTG
Product: membrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 621; Mature: 621
Protein sequence:
>621_residues MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVADLAALAAVQRLDDACANVTS VATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSSKTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKA TNIDTFSIGATLAAVGGVGCSGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLTGQGATSLLTLGLANAEAAAD ATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVSIAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYL LVDLGVNPLPVVASANVYLPLYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNALAGLSSATITPKVELLFGFVT VPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQLGAATVHQMSLTCGAAQTVSN
Sequences:
>Translated_621_residues MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVADLAALAAVQRLDDACANVTS VATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSSKTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKA TNIDTFSIGATLAAVGGVGCSGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLTGQGATSLLTLGLANAEAAAD ATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVSIAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYL LVDLGVNPLPVVASANVYLPLYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNALAGLSSATITPKVELLFGFVT VPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQLGAATVHQMSLTCGAAQTVSN >Mature_621_residues MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVADLAALAAVQRLDDACANVTS VATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSSKTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKA TNIDTFSIGATLAAVGGVGCSGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLTGQGATSLLTLGLANAEAAAD ATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVSIAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYL LVDLGVNPLPVVASANVYLPLYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNALAGLSSATITPKVELLFGFVT VPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQLGAATVHQMSLTCGAAQTVSN
Specific function: Unknown
COG id: COG4655
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62229; Mature: 62229
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVA CCCCCCCCCCCCCCCCCCCCHHCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH DLAALAAVQRLDDACANVTSVATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCC KTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKATNIDTFSIGATLAAVGGVGC CCCCCHHCCCCEEEEEEECCCCEEEECCCCEEEEECCCCCCCCCEEEHHHHHHHHCCCCC SGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCEEHHHHHHHHHHCCCCCC MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLT CCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHEEEEEECCCCEEEEEEE GQGATSLLTLGLANAEAAADATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVS CCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCEEE IAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYLLVDLGVNPLPVVASANVYLP EEEEEEEEECCCEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCEEEECCEEEE LYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT EEEEECCCCEEEEECCCCCCCCCEEEEECCCHHHEEECCCCCCCCEECCCCEECCCCCCH VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNAL HEEHHHHHHHEEEEEEEEEEEEEEECCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHH AGLSSATITPKVELLFGFVTVPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQ HCCCCCCCCCCCEEEEEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGAATVHQMSLTCGAAQTVSN HCHHHHHHHHEECCCHHHCCC >Mature Secondary Structure MIAARHSSNRVTGRGRAAPRRQRGAVVVMASVWILLAMVILGSVDIGNVFLARRDMQRVA CCCCCCCCCCCCCCCCCCCCHHCCCEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH DLAALAAVQRLDDACANVTSVATSNASTNGFSVGGTTTLSADCGYWAPTATGTSSSFYSS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCC KTSVPMLTQLNAVRVTISKSMPYFFFGPTRTVIATSTAKATNIDTFSIGATLAAVGGVGC CCCCCHHCCCCEEEEEEECCCCEEEECCCCEEEEECCCCCCCCCEEEHHHHHHHHCCCCC SGVPTGNPGLVNALLGALLQGQGGTPLTLNLASYQGLACANVKLGDIAVALQSLSVGNGT CCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEECCEEHHHHHHHHHHCCCCCC MGGLVNAQASVGTLLKATVAAVGKTTTLGTALQSSATGALNNILNLSLLSNTSINVARLT CCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHEEEEEECCCCEEEEEEE GQGATSLLTLGLANAEAAADATVNVLDLVMAMAQISQSGKPGVVIGANVPLALPNGTSVS CCCCCEEEEEECCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCCCEEE IAQLQVQVISPPTIAVGEGGKDATGAWRTVATNAQIGVYLLVDLGVNPLPVVASANVYLP EEEEEEEEECCCEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCEEEECCEEEE LYVQLGAGSATLLSTNCRTSPNSATISAQPSVANLCIGQPPLSGNLLNLPATYSCSTPAT EEEEECCCCEEEEECCCCCCCCCEEEEECCCHHHEEECCCCCCCCEECCCCEECCCCCCH VLDVKVLAGAVEVSATVSNVSVALAGNTATNTFYGRGGSDPSYYWTTNTNALGSAVSNAL HEEHHHHHHHEEEEEEEEEEEEEEECCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHHH AGLSSATITPKVELLFGFVTVPLTADFVPKLLGVLTGVLSPLLSALDGIIDPLLDLLGVQ HCCCCCCCCCCCEEEEEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGAATVHQMSLTCGAAQTVSN HCHHHHHHHHEECCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA