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The map label for this gene is nusA

Identifier: 115351434

GI number: 115351434

Start: 1516491

End: 1517966

Strand: Direct

Name: nusA

Synonym: Bamb_1381

Alternate gene names: 115351434

Gene position: 1516491-1517966 (Clockwise)

Preceding gene: 115351433

Following gene: 115351435

Centisome position: 42.64

GC content: 62.8

Gene sequence:

>1476_bases
ATGAGTCGCGAAGTGTTGATGCTGGTGGATGCGCTGGCGCGCGAGAAAAACGTCGACAAGGATGTGGTGCTGGGCGCCCT
CGAGGCTGCGCTCGCGTCCGCTTCCAAGAAGCTGTTCGACGAAGGCGCCGAAATCCGCGTCCATATCGATCGCGAAAGCG
GCGAGCACGAAACCTTCCGTCGCTGGCTCGTCGTCCCTGACGAGGCAGGCTTGCAGGAGCCGGATCGCGAGATCCTGCTG
TTCGAAGCGCGTGAGCAGAACCCCGACGTCGAAGTCGGCGAATTCGTCGAGGAGCCGGTGCCGTCGATCGAGTTCGGCCG
TATCGGCGCGCAGGCCGCCAAGCAGGTGATCCTGCAGAAGGTGCGCGATGCCGAGCGCGAGCAGATCCTGAACGACTACC
TCGAGCGCGGCGAAAAGATCATGACGGGCACGGTGAAGCGCCTCGACAAGGGCAACTTCATCGTCGAATCGGGCCGTGTC
GAAGCGCTGCTGCGCCGCGACCAGCTGATTCCGAAGGAAAACCTGCGCGTGGGCGACCGCGTGCGTGCGTACATCGCGAA
GGTCGACCGCACCGCGCGCGGTCCGCAGATCGAACTCTCGCGCACGGCGCCCGAGTTCCTGATGAAGCTGTTCGAGATGG
AAGTGCCGGAAATCGAGCAGGGCCTGCTCGAGATCAAGGCAGCCGCTCGCGATCCGGGCGTGCGCGCGAAGATCGGCGTG
ATCGCCTACGACAAGCGGATCGATCCGATCGGTACCTGCGTCGGCATCCGCGGCTCCCGCGTGCAGGCCGTGCGCAACGA
GCTTGGTGGCGAAAACATCGACATCGTGCTATGGTCCGAGGATCCCGCCCAGTTCGTGATCGGCGCGCTCGCGCCGGCAG
CCGTCCAGTCGATCGTCGTCGATGAAGAAAAGCACTCGATGGACGTCGTCGTCGACGAGAACGAGCTGGCTGTCGCGATC
GGCCGCAGCGGTCAGAACGTTCGCCTTGCCGGCGAACTGACCGGCTGGCAGATCAACATCATGACGCCGGACGAATCCGC
CCTGAAGCAGGGTGAAGAGCGCGATCGACTGCGTGCGCTCTTCATGGCGCGTCTCGACGTCGACGAAGAAGTTGCCGATA
TCCTGATCGACGAAGGCTTCACGAGCCTCGAAGAGATCGCTTACGTGCCGCTCAACGAAATGCTCGAAATCGAGGCATTC
GACGAGGACACCGTGCACGAGCTGCGCAACCGCGCACGCGACGCACTGTTGACGATGGCGATCGCCAACGAAGAAAAGGT
CGAAAACGCAGCGCTGGATTTGAAGGGCCTCGACGGCGTCACGCCGGAGTTGCTCGCAAAGCTGGCCGAACACGGCATGC
AGACGCGGGACGATCTCGCCGAGCTGGCTGTGGATGAACTGGTCGATATGACCGGGATGGAAGAGGATGCCGCTAAGGCG
TTGATCATGAAAGCACGTGAACACTGGTTCCAGTGA

Upstream 100 bases:

>100_bases
TTGAGGGGAAGAAGGGCGAGGCGGCCATGCTGGATTTCACGCTGGCAGACATCGACAAAGCCCGCCTGATTCCGCAAGTT
GACTTTAGGAGCCGCAAATA

Downstream 100 bases:

>100_bases
GAAATGACCATGGCGCACTGATTTGATGGCGGCCGTATGGCCTGACCCGATGCTAACCGCAAGGAATCGGTCCTTGCACT
AAGAGGAATGAATGGCGAGT

Product: transcription elongation factor NusA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 491; Mature: 490

Protein sequence:

>491_residues
MSREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLVVPDEAGLQEPDREILL
FEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRV
EALLRRDQLIPKENLRVGDRVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGV
IAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAI
GRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAF
DEDTVHELRNRARDALLTMAIANEEKVENAALDLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELVDMTGMEEDAAKA
LIMKAREHWFQ

Sequences:

>Translated_491_residues
MSREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLVVPDEAGLQEPDREILL
FEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRV
EALLRRDQLIPKENLRVGDRVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGV
IAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAI
GRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAF
DEDTVHELRNRARDALLTMAIANEEKVENAALDLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELVDMTGMEEDAAKA
LIMKAREHWFQ
>Mature_490_residues
SREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFRRWLVVPDEAGLQEPDREILLF
EAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQKVRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVE
ALLRRDQLIPKENLRVGDRVRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGVI
AYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVVDEEKHSMDVVVDENELAVAIG
RSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRALFMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFD
EDTVHELRNRARDALLTMAIANEEKVENAALDLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELVDMTGMEEDAAKAL
IMKAREHWFQ

Specific function: Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA [H]

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1789560, Length=494, Percent_Identity=49.7975708502024, Blast_Score=472, Evalue=1e-134,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1612 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010995
- InterPro:   IPR003583
- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013735
- InterPro:   IPR010214
- InterPro:   IPR010213 [H]

Pfam domain/function: PF08529 NusA_N; PF00575 S1 [H]

EC number: NA

Molecular weight: Translated: 54822; Mature: 54691

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS50084 KH_TYPE_1 ; PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFR
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
RWLVVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQK
EEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCHHHCCHHHHHHHHHHH
VRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDR
HHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHH
VRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGV
HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
IAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVV
EEECCCCCCCHHEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
DEEKHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRAL
CCCCCCEEEEECCCCEEEEECCCCCCEEEEEEECCEEEEEECCCHHHHHCCHHHHHHHHH
FMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMA
HHHHCCCHHHHHHHHHHCCCHHHHHHCCCCHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
IANEEKVENAALDLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELVDMTGMEEDAAKA
HCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
LIMKAREHWFQ
HHHHHHHHHCC
>Mature Secondary Structure 
SREVLMLVDALAREKNVDKDVVLGALEAALASASKKLFDEGAEIRVHIDRESGEHETFR
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
RWLVVPDEAGLQEPDREILLFEAREQNPDVEVGEFVEEPVPSIEFGRIGAQAAKQVILQK
EEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCCHHHCCHHHHHHHHHHH
VRDAEREQILNDYLERGEKIMTGTVKRLDKGNFIVESGRVEALLRRDQLIPKENLRVGDR
HHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHH
VRAYIAKVDRTARGPQIELSRTAPEFLMKLFEMEVPEIEQGLLEIKAAARDPGVRAKIGV
HHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
IAYDKRIDPIGTCVGIRGSRVQAVRNELGGENIDIVLWSEDPAQFVIGALAPAAVQSIVV
EEECCCCCCCHHEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHC
DEEKHSMDVVVDENELAVAIGRSGQNVRLAGELTGWQINIMTPDESALKQGEERDRLRAL
CCCCCCEEEEECCCCEEEEECCCCCCEEEEEEECCEEEEEECCCHHHHHCCHHHHHHHHH
FMARLDVDEEVADILIDEGFTSLEEIAYVPLNEMLEIEAFDEDTVHELRNRARDALLTMA
HHHHCCCHHHHHHHHHHCCCHHHHHHCCCCHHHHEEEECCCCHHHHHHHHHHHHHHHHHH
IANEEKVENAALDLKGLDGVTPELLAKLAEHGMQTRDDLAELAVDELVDMTGMEEDAAKA
HCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
LIMKAREHWFQ
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]