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The map label for this gene is scpB [H]

Identifier: 115351431

GI number: 115351431

Start: 1512815

End: 1513837

Strand: Direct

Name: scpB [H]

Synonym: Bamb_1378

Alternate gene names: 115351431

Gene position: 1512815-1513837 (Clockwise)

Preceding gene: 115351430

Following gene: 115351432

Centisome position: 42.54

GC content: 67.64

Gene sequence:

>1023_bases
ATGAATACCCAAGAGGCGAAGATCGTCCTCGAGACTGCTTTGATCTGCGCGCAGGAACCGCTGAAGCTCGGCGATTTGCG
CAAGCTCTTTGCCGACGGCGTGTCGGCTGACACGGTCCGCACGTTGCTCGAAGATCTGAAACAGGATTGGTCCGGCCGCG
GTGTCGAACTGGTGGCGCTGGCAACCGGATGGCGCTTTCAGAGCAAGCCGGCGATGCGTCACTACCTGGATCGACTGCAT
CCCGAGAAGCCGCCGAAATATTCGCGCGCGGTGCTCGAAACGCTCGCGATCATTGCGTATCGGCAACCCGTCACGCGCGG
CGACATCGAAGAGATTCGCGGCGTCACGGTCAATACGCAGGTGGTCAAGCAGCTCGAGGACCGCGGCTGGATCGAGGTGA
TCGGGCATCGCGACGTGCCGGGGCGTCCGGCGCTGTATGCGACGACCAAGCAGTTCCTCGACGATCTCGGCCTAAAGGCG
CTCGACGACCTGCCCGCGCTCGAGGAGCCCGCCGCGAACATCGAGGCCGCGCTGCTCGCGCAGCAGGCGATGGACTTCGA
CGGCGACGTGCCGGCGCTGGAAGCGGCGCCGGAAGCCGGCGAAGCGGCGGCCGACGAACCGCACGCGCAGCCTGACGAAT
TGCCGGGCGACGCGGCGACGGACGTCGCGTCGACGCACGAAATACCGAACCGCGATACGCTGGAAGCTGATCGCGTTCAA
ACCGAACAGGGCGGCGCCGAAGCAGCGCCGGCCGGCGGGCAGTCCGAGCCGCCGCGCGCGGAGTGGAACGAGGAAGATCG
CAAGCCGGCCGCCGACGCGGTTGCCGGAGACGGAGCGGAGGCGCTCGGCGACATGCCGGGCGAGCCTGGAAACGCCGGCG
CCTCACGATCCGGTCCCGCGGATGGCGAGATGCTGGACGATACGTCCGACAGCCTTGCCGATGCCGTACGCAGTGCCAGT
GCGCCCATCGGCGCCGACGCGCTGCCGGACGACGAAGCAGAACCCGAACAGCGCCGCGCCTGA

Upstream 100 bases:

>100_bases
GCTCCCATCAATATGACCGATCAGAATCGGGCGAGCGCGTCTTCCGTTACTTTCGTCTGTTTGATCCGGTTCGTTTGACC
ACAGGGTCTGGCCTAGCTGC

Downstream 100 bases:

>100_bases
TCGCGGCCGACTTCTTGCCGCGCCCGCGCCGGGCGCGAGACCTGACATTTTGAGGTTGTTTTGACAGATATCCACGATAT
TGAATCGTCCGCGCCTGCCG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQSKPAMRHYLDRLH
PEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKA
LDDLPALEEPAANIEAALLAQQAMDFDGDVPALEAAPEAGEAAADEPHAQPDELPGDAATDVASTHEIPNRDTLEADRVQ
TEQGGAEAAPAGGQSEPPRAEWNEEDRKPAADAVAGDGAEALGDMPGEPGNAGASRSGPADGEMLDDTSDSLADAVRSAS
APIGADALPDDEAEPEQRRA

Sequences:

>Translated_340_residues
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQSKPAMRHYLDRLH
PEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKA
LDDLPALEEPAANIEAALLAQQAMDFDGDVPALEAAPEAGEAAADEPHAQPDELPGDAATDVASTHEIPNRDTLEADRVQ
TEQGGAEAAPAGGQSEPPRAEWNEEDRKPAADAVAGDGAEALGDMPGEPGNAGASRSGPADGEMLDDTSDSLADAVRSAS
APIGADALPDDEAEPEQRRA
>Mature_340_residues
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVALATGWRFQSKPAMRHYLDRLH
PEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQVVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKA
LDDLPALEEPAANIEAALLAQQAMDFDGDVPALEAAPEAGEAAADEPHAQPDELPGDAATDVASTHEIPNRDTLEADRVQ
TEQGGAEAAPAGGQSEPPRAEWNEEDRKPAADAVAGDGAEALGDMPGEPGNAGASRSGPADGEMLDDTSDSLADAVRSAS
APIGADALPDDEAEPEQRRA

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 36207; Mature: 36207

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVAL
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
ATGWRFQSKPAMRHYLDRLHPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQ
ECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHH
VVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPALEEPAANIEAALLA
HHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHH
QQAMDFDGDVPALEAAPEAGEAAADEPHAQPDELPGDAATDVASTHEIPNRDTLEADRVQ
HHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
TEQGGAEAAPAGGQSEPPRAEWNEEDRKPAADAVAGDGAEALGDMPGEPGNAGASRSGPA
HHCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCC
DGEMLDDTSDSLADAVRSASAPIGADALPDDEAEPEQRRA
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MNTQEAKIVLETALICAQEPLKLGDLRKLFADGVSADTVRTLLEDLKQDWSGRGVELVAL
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
ATGWRFQSKPAMRHYLDRLHPEKPPKYSRAVLETLAIIAYRQPVTRGDIEEIRGVTVNTQ
ECCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHH
VVKQLEDRGWIEVIGHRDVPGRPALYATTKQFLDDLGLKALDDLPALEEPAANIEAALLA
HHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCHHHHHCCCCCCCCHHHHHHHHHH
QQAMDFDGDVPALEAAPEAGEAAADEPHAQPDELPGDAATDVASTHEIPNRDTLEADRVQ
HHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH
TEQGGAEAAPAGGQSEPPRAEWNEEDRKPAADAVAGDGAEALGDMPGEPGNAGASRSGPA
HHCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCC
DGEMLDDTSDSLADAVRSASAPIGADALPDDEAEPEQRRA
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]