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The map label for this gene is lpsJ [H]

Identifier: 115351404

GI number: 115351404

Start: 1484855

End: 1485496

Strand: Direct

Name: lpsJ [H]

Synonym: Bamb_1351

Alternate gene names: 115351404

Gene position: 1484855-1485496 (Clockwise)

Preceding gene: 115351403

Following gene: 115351408

Centisome position: 41.75

GC content: 65.89

Gene sequence:

>642_bases
ATGGCCTGGAATCGTGACCAGATGGCCGCGCGCGCGGCGAAGGAACTGCAGGACGGCTTCTACGTGAACCTCGGCATCGG
CCTGCCGACGCTCGTCGCGAACCACGTGCCGGAAGGCGTCGAGGTGTGGCTGCAGTCGGAGAACGGCCTGCTCGGCATCG
GCCCGTCGCCGACGGAGGACGAAGTCGATGCCGATCTCATCAACGCCGGCAAGCAGACCGTCACGACGCTGCCGGGCTCG
TCGATCTTCTCGTCGGCCGATTCGTTCGCGATGATTCGCGGCGGCCACATCAACCTCGCGATCCTCGGCGCGATGCAGGT
CAGCAAGACGGGCGACCTCGCGAACTGGATGATCCCGGGCAAGATGATCAAGGGCATGGGCGGCGCGATGGATCTCGTCG
CGGGCGTGAAGCGCGTCGTCGTGCTGATGGAGCACGTCGCGAAGGGCGACCAGCACAAGATCCTCGATGAATGCAACCTG
CCGCTGACGGGTGTCGGCGTGGTCGACCTGATCATCACCGATCTCGGTGTGATCGAAGTGACGCCGGCCGGCCTGAAGGT
GCTCGAGCTCGCCGACGGCGTGACCGCGGAAGAGATCCAGACGAAGACGGGCGCACCGCTCGATGTGAGCGCGGTCGCCT
GA

Upstream 100 bases:

>100_bases
CAGGTCCACACGCCGGGCATCTTCGTGCAGCGCATCGTGCTGAACGCGACGCCCGAGAAACGCATCGAACAACGCGTCGT
ACGCGCGAAAGGAGACTGAC

Downstream 100 bases:

>100_bases
GCATCGTCCTTTCAGCATGACCCTCGACGCCCCGCGTTCCGTCAGGAACGCGGGGCGTTTTGTCATGACCGCAGGCGTCA
CGCGATCGCGCCGCCGCCGT

Product: 3-oxoacid CoA-transferase subunit B

Products: NA

Alternate protein names: OXCT B; Succinyl CoA:3-oxoacid CoA-transferase [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MAWNRDQMAARAAKELQDGFYVNLGIGLPTLVANHVPEGVEVWLQSENGLLGIGPSPTEDEVDADLINAGKQTVTTLPGS
SIFSSADSFAMIRGGHINLAILGAMQVSKTGDLANWMIPGKMIKGMGGAMDLVAGVKRVVVLMEHVAKGDQHKILDECNL
PLTGVGVVDLIITDLGVIEVTPAGLKVLELADGVTAEEIQTKTGAPLDVSAVA

Sequences:

>Translated_213_residues
MAWNRDQMAARAAKELQDGFYVNLGIGLPTLVANHVPEGVEVWLQSENGLLGIGPSPTEDEVDADLINAGKQTVTTLPGS
SIFSSADSFAMIRGGHINLAILGAMQVSKTGDLANWMIPGKMIKGMGGAMDLVAGVKRVVVLMEHVAKGDQHKILDECNL
PLTGVGVVDLIITDLGVIEVTPAGLKVLELADGVTAEEIQTKTGAPLDVSAVA
>Mature_212_residues
AWNRDQMAARAAKELQDGFYVNLGIGLPTLVANHVPEGVEVWLQSENGLLGIGPSPTEDEVDADLINAGKQTVTTLPGSS
IFSSADSFAMIRGGHINLAILGAMQVSKTGDLANWMIPGKMIKGMGGAMDLVAGVKRVVVLMEHVAKGDQHKILDECNLP
LTGVGVVDLIITDLGVIEVTPAGLKVLELADGVTAEEIQTKTGAPLDVSAVA

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=208, Percent_Identity=59.6153846153846, Blast_Score=253, Evalue=8e-68,
Organism=Homo sapiens, GI11545841, Length=208, Percent_Identity=59.1346153846154, Blast_Score=242, Evalue=2e-64,
Organism=Escherichia coli, GI1788552, Length=207, Percent_Identity=49.2753623188406, Blast_Score=210, Evalue=7e-56,
Organism=Caenorhabditis elegans, GI17531517, Length=209, Percent_Identity=54.5454545454545, Blast_Score=232, Evalue=1e-61,
Organism=Drosophila melanogaster, GI21358325, Length=208, Percent_Identity=58.6538461538462, Blast_Score=252, Evalue=1e-67,
Organism=Drosophila melanogaster, GI24655794, Length=208, Percent_Identity=58.6538461538462, Blast_Score=251, Evalue=3e-67,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165
- InterPro:   IPR004164 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.5 [H]

Molecular weight: Translated: 22219; Mature: 22088

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: PS01274 COA_TRANSF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWNRDQMAARAAKELQDGFYVNLGIGLPTLVANHVPEGVEVWLQSENGLLGIGPSPTED
CCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCC
EVDADLINAGKQTVTTLPGSSIFSSADSFAMIRGGHINLAILGAMQVSKTGDLANWMIPG
HHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEECCCEEEEEEEEEEECCCCCCHHHCCCH
KMIKGMGGAMDLVAGVKRVVVLMEHVAKGDQHKILDECNLPLTGVGVVDLIITDLGVIEV
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHCCCEEEE
TPAGLKVLELADGVTAEEIQTKTGAPLDVSAVA
CCCCEEEEHHHCCCCHHHHHHCCCCCCEECCCC
>Mature Secondary Structure 
AWNRDQMAARAAKELQDGFYVNLGIGLPTLVANHVPEGVEVWLQSENGLLGIGPSPTED
CCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHCCCCEEEEEECCCCEEECCCCCCCC
EVDADLINAGKQTVTTLPGSSIFSSADSFAMIRGGHINLAILGAMQVSKTGDLANWMIPG
HHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEECCCEEEEEEEEEEECCCCCCHHHCCCH
KMIKGMGGAMDLVAGVKRVVVLMEHVAKGDQHKILDECNLPLTGVGVVDLIITDLGVIEV
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHCCCEEEE
TPAGLKVLELADGVTAEEIQTKTGAPLDVSAVA
CCCCEEEEHHHCCCCHHHHHHCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9385134 [H]