| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351337
Identifier: 115351337
GI number: 115351337
Start: 1405310
End: 1405858
Strand: Direct
Name: 115351337
Synonym: Bamb_1284
Alternate gene names: NA
Gene position: 1405310-1405858 (Clockwise)
Preceding gene: 115351336
Following gene: 115351339
Centisome position: 39.51
GC content: 74.32
Gene sequence:
>549_bases ATGAGCAACTTTCCCGTTTTCGTGCTGCCGGGCTACGGCAACTCCGGTCCGCTTCACTGGCAAAGCCGCTGGGAGCGCGC GGACGCGCGTTTCGTGCGCATCGCGATGCCCGACTGGGACCGTGCGTTCCGCAACGGCTGGTGTCTCGCGCTCGATCGCG CGGTCGAGGCCGCGCCGGGCCCGGTGTTGATCGCCGCGCACAGCCTCGGCACGCTGACCACCGCGTGGTGGGCGACCCGC TACGCGCGGCCGGCCGCGCTCGCGAAGGTGCGCGGCGCGCTGCTCGTCGCGCTGCCCGATCCGGCCGGGCCCGGGTTTCC GGCCGACGCGCACGGCTTCGGGCCCGTGCCGCACGAACGGCTGCCGTTTCCGACCTGTGTGGCCGCGAGCAGCGACGATT CGTACGGCTCGCTCGCGTTCGCGCGCGGCTGCGCACGCGCGTGGGGCAGTGCGTTCCATGACCTCGGCCCGCGCGGCCAC CTCAACGCGGACAGCGGGCTCGGCGACTGGCCCGACGCACGCGGCTGGCTCGACGCGCTCGCGCGCTAG
Upstream 100 bases:
>100_bases GCACATCCCTTCCGCGATTCGACAGGCAACATCAGGGAGGAACGGGTGTGCGACACTTCGTCGACGTCACATAACGACTT CATGCGTCGACGAATCCTCC
Downstream 100 bases:
>100_bases CCATCGATTCACTGGCCGTCGAGGATCGGTCGCACGCCGCCGACGGCGCAGCGACGCGAACGTCCCGGCCAGCTCAGATC GCCTGCTTCGCCTTCAACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 181
Protein sequence:
>182_residues MSNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPGPVLIAAHSLGTLTTAWWATR YARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHERLPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGH LNADSGLGDWPDARGWLDALAR
Sequences:
>Translated_182_residues MSNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPGPVLIAAHSLGTLTTAWWATR YARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHERLPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGH LNADSGLGDWPDARGWLDALAR >Mature_181_residues SNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPGPVLIAAHSLGTLTTAWWATRY ARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHERLPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGHL NADSGLGDWPDARGWLDALAR
Specific function: Unknown
COG id: COG3545
COG function: function code R; Predicted esterase of the alpha/beta hydrolase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19539; Mature: 19408
Theoretical pI: Translated: 8.11; Mature: 8.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPG CCCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHCCEEEEEHHHHHCCCC PVLIAAHSLGTLTTAWWATRYARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHER CEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCC LPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGHLNADSGLGDWPDARGWLDAL CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH AR CC >Mature Secondary Structure SNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPG CCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHCCEEEEEHHHHHCCCC PVLIAAHSLGTLTTAWWATRYARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHER CEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCC LPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGHLNADSGLGDWPDARGWLDAL CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH AR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA