Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351337

Identifier: 115351337

GI number: 115351337

Start: 1405310

End: 1405858

Strand: Direct

Name: 115351337

Synonym: Bamb_1284

Alternate gene names: NA

Gene position: 1405310-1405858 (Clockwise)

Preceding gene: 115351336

Following gene: 115351339

Centisome position: 39.51

GC content: 74.32

Gene sequence:

>549_bases
ATGAGCAACTTTCCCGTTTTCGTGCTGCCGGGCTACGGCAACTCCGGTCCGCTTCACTGGCAAAGCCGCTGGGAGCGCGC
GGACGCGCGTTTCGTGCGCATCGCGATGCCCGACTGGGACCGTGCGTTCCGCAACGGCTGGTGTCTCGCGCTCGATCGCG
CGGTCGAGGCCGCGCCGGGCCCGGTGTTGATCGCCGCGCACAGCCTCGGCACGCTGACCACCGCGTGGTGGGCGACCCGC
TACGCGCGGCCGGCCGCGCTCGCGAAGGTGCGCGGCGCGCTGCTCGTCGCGCTGCCCGATCCGGCCGGGCCCGGGTTTCC
GGCCGACGCGCACGGCTTCGGGCCCGTGCCGCACGAACGGCTGCCGTTTCCGACCTGTGTGGCCGCGAGCAGCGACGATT
CGTACGGCTCGCTCGCGTTCGCGCGCGGCTGCGCACGCGCGTGGGGCAGTGCGTTCCATGACCTCGGCCCGCGCGGCCAC
CTCAACGCGGACAGCGGGCTCGGCGACTGGCCCGACGCACGCGGCTGGCTCGACGCGCTCGCGCGCTAG

Upstream 100 bases:

>100_bases
GCACATCCCTTCCGCGATTCGACAGGCAACATCAGGGAGGAACGGGTGTGCGACACTTCGTCGACGTCACATAACGACTT
CATGCGTCGACGAATCCTCC

Downstream 100 bases:

>100_bases
CCATCGATTCACTGGCCGTCGAGGATCGGTCGCACGCCGCCGACGGCGCAGCGACGCGAACGTCCCGGCCAGCTCAGATC
GCCTGCTTCGCCTTCAACGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPGPVLIAAHSLGTLTTAWWATR
YARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHERLPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGH
LNADSGLGDWPDARGWLDALAR

Sequences:

>Translated_182_residues
MSNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPGPVLIAAHSLGTLTTAWWATR
YARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHERLPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGH
LNADSGLGDWPDARGWLDALAR
>Mature_181_residues
SNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPGPVLIAAHSLGTLTTAWWATRY
ARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHERLPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGHL
NADSGLGDWPDARGWLDALAR

Specific function: Unknown

COG id: COG3545

COG function: function code R; Predicted esterase of the alpha/beta hydrolase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19539; Mature: 19408

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPG
CCCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHCCEEEEEHHHHHCCCC
PVLIAAHSLGTLTTAWWATRYARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHER
CEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
LPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGHLNADSGLGDWPDARGWLDAL
CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
AR
CC
>Mature Secondary Structure 
SNFPVFVLPGYGNSGPLHWQSRWERADARFVRIAMPDWDRAFRNGWCLALDRAVEAAPG
CCCCEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHCCEEEEEHHHHHCCCC
PVLIAAHSLGTLTTAWWATRYARPAALAKVRGALLVALPDPAGPGFPADAHGFGPVPHER
CEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
LPFPTCVAASSDDSYGSLAFARGCARAWGSAFHDLGPRGHLNADSGLGDWPDARGWLDAL
CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
AR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA