| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351032
Identifier: 115351032
GI number: 115351032
Start: 1067448
End: 1068878
Strand: Direct
Name: 115351032
Synonym: Bamb_0978
Alternate gene names: NA
Gene position: 1067448-1068878 (Clockwise)
Preceding gene: 115351031
Following gene: 115351033
Centisome position: 30.01
GC content: 67.3
Gene sequence:
>1431_bases ATGAAACGACATGCCGCCTGGGCGGGCATGGCGTCGGGAGCCGCGCTTGGCGCGTTTCCCGCGCTCGCATCGGCCGCCAC GCTCGACGGTGCCACGCTGTCCGCACTCTGGGGTATCCCGTTCGCCGGGATCCTGCTGTCCATCGCGGTGTTCCCGCTCG TCGCGCCGGTGTTCTGGCATCACCATTTCGGCAAGATCGCCGCGGCGTGGGCGATCGCGTTCCTGGCGCCGTTCGCGGTC GCGTTCGGCGCCGGCACGGCGTTCGGTACGCTCGTGCACGCGCTGCTCGAGGAATACATCCCGTTCATCGTGCTGCTGAC CGCGCTCTATACGGTCGCCGGCGGCATCTGCGTCAACGGCAACCTGCACGGCACACCGAAACTGAACACCGCGATCCTCG CGCTCGGCACGCTGCTCGCGAGCGTGATGGGCACGACGGGCGCCGCGATGCTGCTGATCCGCCCGCTGCTGCGCGCGAAC GACAACCGCAAGCATGTCGTGCACGTCGTGATCTTCTTCATCTTTCTCGTCGCGAACGCGGGCGGCTCGCTGTCGCCGCT CGGCGATCCGCCGCTGTTCCTCGGCTTCCTGAACGGCGTGAGCTTCTTCTGGACGACCACGCATCTCGCGCTGCCGATGC TGTTCATCTGCGCGGTGCTGCTGACGCTGTTCTTCGTGCTCGATACGTACTTCTACCGGAAGGGCGGCGAGGAGCGGCCG GCCGCGCTCGACCCGACGCCCGACGGAGCCGCGCTGTCGATCGACGGCAAGGTCAACTTCGTGCTGCTCGCGGCCGTGAT CGGCCTCGTGCTGATGAGCGGCATCTGGAAGCCGGGCATCACGTTCGACGTGTGGGGCACGCACGTCGCGCTGCAGAATC TCGTGCGCGACGTTGCGCTCATCGTCGTGGCGCTCGCGTCGCTCGCGCTGACGCCGCGCTCGGCGCGCGAAGGCAACGCA TTCAACTGGGCGCCGATCGAGGAGGTCGCGAAGCTGTTCGCCGGGATCTTCGTGACGATCGCCCCGGTGATCGTGATCCT GCGCGCGGGTGCGCAGGGCGCGTTCGCGCAGATCGTCCATCTCGTCACGGGCCCCGACGGCAAGCCGATCGACGCGATGT ACTTCTGGGCGACCGGCCTGCTGTCGTCGTTCCTCGACAATGCCCCGACCTATCTCGTGTTCTTCAACCTCGCGGGCGGC GACGCGCAAGCGCTGATGACGACGGGCGCGACGACGCTCGCCGCGATTTCCGCGGGGGCGGTGTTCATGGGCGCGAACAG CTACATCGGCAACGCGCCGAACTTCATGGTGAAGGCGATCGCGGAGTCGCGCGGCGTGAGGATGCCGAGCTTCTTCGCGT ATCTCGGCTGGGCGCTCGTAGTATTGGTACCGGTGTTCCTGCTGACGTCGTGGCTTTTCTTCCCGGCGTAG
Upstream 100 bases:
>100_bases GCACACGGCCCGTACCGCGTTCACGCGATCGTCGTGCGCGGCGCATGACGCGCGCGCCGGCTTCATCCTCACTCGACTCA CTCGCACAAGGAAGTTCTGC
Downstream 100 bases:
>100_bases GCTGATTATTTTCAACCAAGCGCGGACGGTTCCGGCGGCGCACGATGCGCCGCGTTCCGGCCGCGGCATGCGGAGATGGC GATGCAGAAGATCCTGGTCG
Product: Na+/H+ antiporter NhaD and related arsenite permease-like protein
Products: NA
Alternate protein names: Transmembrane Protein; Arsenite-Anitmonite Efflux Pump ArsB Family; Na+ Antiporter; Na+/H+ Antiporter; Transporter Uit6 Family; Signal Peptide; ArsB Family Arsenate Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases; Na+/H+ Antiporter NhaD; Arsenite Transport Protein ArsB; NA+/H+ Antiporter Permease; Na+/H+ Antiporter NhaD-Like Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases-Like; Na+/H+ Antiporter NhaD Or Related Arsenite Permease
Number of amino acids: Translated: 476; Mature: 476
Protein sequence:
>476_residues MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWHHHFGKIAAAWAIAFLAPFAV AFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNGNLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRAN DNRKHVVHVVIFFIFLVANAGGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVALIVVALASLALTPRSAREGNA FNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVHLVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGG DAQALMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA
Sequences:
>Translated_476_residues MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWHHHFGKIAAAWAIAFLAPFAV AFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNGNLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRAN DNRKHVVHVVIFFIFLVANAGGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVALIVVALASLALTPRSAREGNA FNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVHLVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGG DAQALMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA >Mature_476_residues MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWHHHFGKIAAAWAIAFLAPFAV AFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNGNLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRAN DNRKHVVHVVIFFIFLVANAGGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVALIVVALASLALTPRSAREGNA FNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVHLVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGG DAQALMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA
Specific function: Unknown
COG id: COG1055
COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50071; Mature: 50071
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWH CCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH HHFGKIAAAWAIAFLAPFAVAFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNG HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC NLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRANDNRKHVVHVVIFFIFLVANA CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC GGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVAL CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH IVVALASLALTPRSAREGNAFNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVH HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGGDAQALMTTGATTLAAISAGA HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCHHHHHHHHCCC VFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA CEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWH CCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH HHFGKIAAAWAIAFLAPFAVAFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNG HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC NLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRANDNRKHVVHVVIFFIFLVANA CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC GGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVAL CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH IVVALASLALTPRSAREGNAFNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVH HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGGDAQALMTTGATTLAAISAGA HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCHHHHHHHHCCC VFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA CEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA