Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351032

Identifier: 115351032

GI number: 115351032

Start: 1067448

End: 1068878

Strand: Direct

Name: 115351032

Synonym: Bamb_0978

Alternate gene names: NA

Gene position: 1067448-1068878 (Clockwise)

Preceding gene: 115351031

Following gene: 115351033

Centisome position: 30.01

GC content: 67.3

Gene sequence:

>1431_bases
ATGAAACGACATGCCGCCTGGGCGGGCATGGCGTCGGGAGCCGCGCTTGGCGCGTTTCCCGCGCTCGCATCGGCCGCCAC
GCTCGACGGTGCCACGCTGTCCGCACTCTGGGGTATCCCGTTCGCCGGGATCCTGCTGTCCATCGCGGTGTTCCCGCTCG
TCGCGCCGGTGTTCTGGCATCACCATTTCGGCAAGATCGCCGCGGCGTGGGCGATCGCGTTCCTGGCGCCGTTCGCGGTC
GCGTTCGGCGCCGGCACGGCGTTCGGTACGCTCGTGCACGCGCTGCTCGAGGAATACATCCCGTTCATCGTGCTGCTGAC
CGCGCTCTATACGGTCGCCGGCGGCATCTGCGTCAACGGCAACCTGCACGGCACACCGAAACTGAACACCGCGATCCTCG
CGCTCGGCACGCTGCTCGCGAGCGTGATGGGCACGACGGGCGCCGCGATGCTGCTGATCCGCCCGCTGCTGCGCGCGAAC
GACAACCGCAAGCATGTCGTGCACGTCGTGATCTTCTTCATCTTTCTCGTCGCGAACGCGGGCGGCTCGCTGTCGCCGCT
CGGCGATCCGCCGCTGTTCCTCGGCTTCCTGAACGGCGTGAGCTTCTTCTGGACGACCACGCATCTCGCGCTGCCGATGC
TGTTCATCTGCGCGGTGCTGCTGACGCTGTTCTTCGTGCTCGATACGTACTTCTACCGGAAGGGCGGCGAGGAGCGGCCG
GCCGCGCTCGACCCGACGCCCGACGGAGCCGCGCTGTCGATCGACGGCAAGGTCAACTTCGTGCTGCTCGCGGCCGTGAT
CGGCCTCGTGCTGATGAGCGGCATCTGGAAGCCGGGCATCACGTTCGACGTGTGGGGCACGCACGTCGCGCTGCAGAATC
TCGTGCGCGACGTTGCGCTCATCGTCGTGGCGCTCGCGTCGCTCGCGCTGACGCCGCGCTCGGCGCGCGAAGGCAACGCA
TTCAACTGGGCGCCGATCGAGGAGGTCGCGAAGCTGTTCGCCGGGATCTTCGTGACGATCGCCCCGGTGATCGTGATCCT
GCGCGCGGGTGCGCAGGGCGCGTTCGCGCAGATCGTCCATCTCGTCACGGGCCCCGACGGCAAGCCGATCGACGCGATGT
ACTTCTGGGCGACCGGCCTGCTGTCGTCGTTCCTCGACAATGCCCCGACCTATCTCGTGTTCTTCAACCTCGCGGGCGGC
GACGCGCAAGCGCTGATGACGACGGGCGCGACGACGCTCGCCGCGATTTCCGCGGGGGCGGTGTTCATGGGCGCGAACAG
CTACATCGGCAACGCGCCGAACTTCATGGTGAAGGCGATCGCGGAGTCGCGCGGCGTGAGGATGCCGAGCTTCTTCGCGT
ATCTCGGCTGGGCGCTCGTAGTATTGGTACCGGTGTTCCTGCTGACGTCGTGGCTTTTCTTCCCGGCGTAG

Upstream 100 bases:

>100_bases
GCACACGGCCCGTACCGCGTTCACGCGATCGTCGTGCGCGGCGCATGACGCGCGCGCCGGCTTCATCCTCACTCGACTCA
CTCGCACAAGGAAGTTCTGC

Downstream 100 bases:

>100_bases
GCTGATTATTTTCAACCAAGCGCGGACGGTTCCGGCGGCGCACGATGCGCCGCGTTCCGGCCGCGGCATGCGGAGATGGC
GATGCAGAAGATCCTGGTCG

Product: Na+/H+ antiporter NhaD and related arsenite permease-like protein

Products: NA

Alternate protein names: Transmembrane Protein; Arsenite-Anitmonite Efflux Pump ArsB Family; Na+ Antiporter; Na+/H+ Antiporter; Transporter Uit6 Family; Signal Peptide; ArsB Family Arsenate Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases; Na+/H+ Antiporter NhaD; Arsenite Transport Protein ArsB; NA+/H+ Antiporter Permease; Na+/H+ Antiporter NhaD-Like Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases-Like; Na+/H+ Antiporter NhaD Or Related Arsenite Permease

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWHHHFGKIAAAWAIAFLAPFAV
AFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNGNLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRAN
DNRKHVVHVVIFFIFLVANAGGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP
AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVALIVVALASLALTPRSAREGNA
FNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVHLVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGG
DAQALMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA

Sequences:

>Translated_476_residues
MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWHHHFGKIAAAWAIAFLAPFAV
AFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNGNLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRAN
DNRKHVVHVVIFFIFLVANAGGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP
AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVALIVVALASLALTPRSAREGNA
FNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVHLVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGG
DAQALMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA
>Mature_476_residues
MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWHHHFGKIAAAWAIAFLAPFAV
AFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNGNLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRAN
DNRKHVVHVVIFFIFLVANAGGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP
AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVALIVVALASLALTPRSAREGNA
FNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVHLVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGG
DAQALMTTGATTLAAISAGAVFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50071; Mature: 50071

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWH
CCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
HHFGKIAAAWAIAFLAPFAVAFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
NLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRANDNRKHVVHVVIFFIFLVANA
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
GGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVAL
CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH
IVVALASLALTPRSAREGNAFNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVH
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGGDAQALMTTGATTLAAISAGA
HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCHHHHHHHHCCC
VFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA
CEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRHAAWAGMASGAALGAFPALASAATLDGATLSALWGIPFAGILLSIAVFPLVAPVFWH
CCCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
HHFGKIAAAWAIAFLAPFAVAFGAGTAFGTLVHALLEEYIPFIVLLTALYTVAGGICVNG
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
NLHGTPKLNTAILALGTLLASVMGTTGAAMLLIRPLLRANDNRKHVVHVVIFFIFLVANA
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
GGSLSPLGDPPLFLGFLNGVSFFWTTTHLALPMLFICAVLLTLFFVLDTYFYRKGGEERP
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AALDPTPDGAALSIDGKVNFVLLAAVIGLVLMSGIWKPGITFDVWGTHVALQNLVRDVAL
CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHH
IVVALASLALTPRSAREGNAFNWAPIEEVAKLFAGIFVTIAPVIVILRAGAQGAFAQIVH
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LVTGPDGKPIDAMYFWATGLLSSFLDNAPTYLVFFNLAGGDAQALMTTGATTLAAISAGA
HHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCHHHHHHHHCCC
VFMGANSYIGNAPNFMVKAIAESRGVRMPSFFAYLGWALVVLVPVFLLTSWLFFPA
CEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA