Click here to switch to the map view.

The map label for this gene is 115350996

Identifier: 115350996

GI number: 115350996

Start: 1034698

End: 1035876

Strand: Direct

Name: 115350996

Synonym: Bamb_0942

Alternate gene names: NA

Gene position: 1034698-1035876 (Clockwise)

Preceding gene: 115350995

Following gene: 115350999

Centisome position: 29.09

GC content: 67.43

Gene sequence:

>1179_bases
ATGGGTGAGTGCATGGACGGCCGGTCCGACAACGAATTTCCGATAGCGCCGCCGGCGCCCCGCAAGGGGCGCGGTGCGGT
CGACAATCTCCAGGGGCGGTACGAAACGGCGCTGCGCGAAGCGGTCGACGACGGCTGGGCGCACGAATCGGACGACGCCG
ATCTGCCCACGCCGCTGCGTACGCAGGTGTTCGAGGAGCGCGCGAAGAGCATCCTCACGCACAACCAGTCGCCTGACATC
CCGTTCAGCGTGTCGCTCAATCCGTATCGCGGCTGCGAGCACGGGTGCATCTACTGTTTTGCACGGCCGACCCACAGCTA
TCTAGGGCTGTCGCCGGGGCTCGACTTCGAGAGTCGCATCTATGCGAAGGTCAATGCGGCCGAACTGCTCGAGCGCGAGA
TTTCGCGCAAGCGTTACGTGCCGGAGCCGATCGCGCTCGGCGTCAACACCGACGCATACCAGCCGGTCGAGCGCGACCTG
CGCATCACGCGCAGCGTGATCCAGGTGATGCACGATCATGCGCTACCGTTCGCCGCGATCACGAAATCGTCGCTGATCGA
GCGCGATCTCGACCTGCTTGCCCCGATGGCCGAGCGCGGGCAGGTGATGGCGGCGGTCACGATCACGACGCTCGACGCCG
ATCTCGCGCGCACGCTCGAGCCGCGTGCGGCGACGCCGGCGCGCCGGCTGCGTACGATCCGCGCGTTGCGCGACGCGGGT
GTGCCGGTGGGCGTCAGCATTGCACCGATGATCCCGTTCGTCACCGAGCCGGACATGGAGCGCGTGCTGGAGGCCTGCGC
GGAAGCAGGCGCGACGCATGCGAGCTATATCGTCCTGCGGCTGCCGTGGGAGGTCGCGCCGCTGTTCAAGAGCTGGCTCG
CCGCGCATTTCCCCGATCGCGCGGAGCGCGTGATGAACCGTGTGCGCGACATGCGCGGCGGGAAGGACTACGACTCCGAT
TTCTCGAAACGGATGAAGGGCGAGGGGATCTGGGCCGACCTGTTGCGGCAGCGTTTCCGTCAGGCCGTGAAGCGGCTCGG
GTTGAACGAGCGCAGGAACGGCATTCTGGATCTGTCGCAGTTTCGCGGCGCGCCGGCCGGCGCGGTGGCAGCGCGGCGCA
CCGTGGTGGGCGCAACGAGCACGACGTCGCGTGACGACACGCAGTTGAGCCTGTTCTGA

Upstream 100 bases:

>100_bases
CTGCCGCGGCCGGTTGCCGGCGCCGCTGTCGGGCCCCTTATCTCGCCCTTGGCATGCTGCACCCAATACTGTATAAATAT
ACAGTATTGGGTGCAGGCGA

Downstream 100 bases:

>100_bases
CGGTGCGCGTCGGCGCTTATTGCGAAATCTGCTTCGCCGCTTCGACTTGCGATTCGAAATACGTCTGGAACGACAGCGCA
AGCGCGGTCATCAGCAGGAA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MGECMDGRSDNEFPIAPPAPRKGRGAVDNLQGRYETALREAVDDGWAHESDDADLPTPLRTQVFEERAKSILTHNQSPDI
PFSVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIYAKVNAAELLEREISRKRYVPEPIALGVNTDAYQPVERDL
RITRSVIQVMHDHALPFAAITKSSLIERDLDLLAPMAERGQVMAAVTITTLDADLARTLEPRAATPARRLRTIRALRDAG
VPVGVSIAPMIPFVTEPDMERVLEACAEAGATHASYIVLRLPWEVAPLFKSWLAAHFPDRAERVMNRVRDMRGGKDYDSD
FSKRMKGEGIWADLLRQRFRQAVKRLGLNERRNGILDLSQFRGAPAGAVAARRTVVGATSTTSRDDTQLSLF

Sequences:

>Translated_392_residues
MGECMDGRSDNEFPIAPPAPRKGRGAVDNLQGRYETALREAVDDGWAHESDDADLPTPLRTQVFEERAKSILTHNQSPDI
PFSVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIYAKVNAAELLEREISRKRYVPEPIALGVNTDAYQPVERDL
RITRSVIQVMHDHALPFAAITKSSLIERDLDLLAPMAERGQVMAAVTITTLDADLARTLEPRAATPARRLRTIRALRDAG
VPVGVSIAPMIPFVTEPDMERVLEACAEAGATHASYIVLRLPWEVAPLFKSWLAAHFPDRAERVMNRVRDMRGGKDYDSD
FSKRMKGEGIWADLLRQRFRQAVKRLGLNERRNGILDLSQFRGAPAGAVAARRTVVGATSTTSRDDTQLSLF
>Mature_391_residues
GECMDGRSDNEFPIAPPAPRKGRGAVDNLQGRYETALREAVDDGWAHESDDADLPTPLRTQVFEERAKSILTHNQSPDIP
FSVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRIYAKVNAAELLEREISRKRYVPEPIALGVNTDAYQPVERDLR
ITRSVIQVMHDHALPFAAITKSSLIERDLDLLAPMAERGQVMAAVTITTLDADLARTLEPRAATPARRLRTIRALRDAGV
PVGVSIAPMIPFVTEPDMERVLEACAEAGATHASYIVLRLPWEVAPLFKSWLAAHFPDRAERVMNRVRDMRGGKDYDSDF
SKRMKGEGIWADLLRQRFRQAVKRLGLNERRNGILDLSQFRGAPAGAVAARRTVVGATSTTSRDDTQLSLF

Specific function: Unknown

COG id: COG1533

COG function: function code L; DNA repair photolyase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 43618; Mature: 43487

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS00133 CARBOXYPEPT_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGECMDGRSDNEFPIAPPAPRKGRGAVDNLQGRYETALREAVDDGWAHESDDADLPTPLR
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
TQVFEERAKSILTHNQSPDIPFSVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRI
HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECCCHHHCCCCCCCCHHHHH
YAKVNAAELLEREISRKRYVPEPIALGVNTDAYQPVERDLRITRSVIQVMHDHALPFAAI
HHCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
TKSSLIERDLDLLAPMAERGQVMAAVTITTLDADLARTLEPRAATPARRLRTIRALRDAG
HHHHHHHHHHHHHCCHHHCCCEEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
VPVGVSIAPMIPFVTEPDMERVLEACAEAGATHASYIVLRLPWEVAPLFKSWLAAHFPDR
CCCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCHH
AERVMNRVRDMRGGKDYDSDFSKRMKGEGIWADLLRQRFRQAVKRLGLNERRNGILDLSQ
HHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCEEHHH
FRGAPAGAVAARRTVVGATSTTSRDDTQLSLF
HCCCCCHHHHHHHHEEECCCCCCCCCCEEECC
>Mature Secondary Structure 
GECMDGRSDNEFPIAPPAPRKGRGAVDNLQGRYETALREAVDDGWAHESDDADLPTPLR
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
TQVFEERAKSILTHNQSPDIPFSVSLNPYRGCEHGCIYCFARPTHSYLGLSPGLDFESRI
HHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEECCCHHHCCCCCCCCHHHHH
YAKVNAAELLEREISRKRYVPEPIALGVNTDAYQPVERDLRITRSVIQVMHDHALPFAAI
HHCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
TKSSLIERDLDLLAPMAERGQVMAAVTITTLDADLARTLEPRAATPARRLRTIRALRDAG
HHHHHHHHHHHHHCCHHHCCCEEEEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
VPVGVSIAPMIPFVTEPDMERVLEACAEAGATHASYIVLRLPWEVAPLFKSWLAAHFPDR
CCCCCCHHCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCHH
AERVMNRVRDMRGGKDYDSDFSKRMKGEGIWADLLRQRFRQAVKRLGLNERRNGILDLSQ
HHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCEEHHH
FRGAPAGAVAARRTVVGATSTTSRDDTQLSLF
HCCCCCHHHHHHHHEEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]