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The map label for this gene is yciM [H]

Identifier: 115350980

GI number: 115350980

Start: 1018176

End: 1019348

Strand: Direct

Name: yciM [H]

Synonym: Bamb_0926

Alternate gene names: 115350980

Gene position: 1018176-1019348 (Clockwise)

Preceding gene: 115350979

Following gene: 115350981

Centisome position: 28.63

GC content: 64.11

Gene sequence:

>1173_bases
ATGGATCTGGATTTCTGGTGGTTGCTCGCAATTCCGGTGGCGTTCGCGCTTGGCTGGGCGGCGTCACGCTATGACCTGAA
GAACCTCCTGTCGGAGAGCGCCAACCTGCCGCGATCGTATTTCCGCGGCCTGAACTTTCTGTTGAACGAACAACCGGACA
AGGCGATCGACGCGTTCATCGAGGTCGCGAAGCTCGACCCGGAGACGGTCGAACTGCACTTCGCGCTCGGCAACCTGTTT
CGCCGCCGCGGTGAAACGGACCGGGCGATCCGCGTGCACCAGAATCTGCTGAGTCGCACGGACCTGCCGGTGAACGAGCG
CGACCACGCGCTGTATGAACTCGGCCAGGATTTTCTGAAAGCCGGCCTGCTCGATCGTGCCGAAGAGGCTTTCCACCGGC
TCGCCGACGGCGACTACGCGCTGGGTGCGCAGCGGGCGCTGCTGACGATCTACGAGATCGAGAAGGACTGGAACAAGTCG
ATCGATACCGCGAAGCGGATCGAGTCGATGAGCGACAAGCCGCTCGCCATCGAAATCGCGCAGTTCCACTGCGAACTCGC
GCAGGACGCGCTGCAGCGCAAGAACGCCGCGGCAGCGGCCGAACAGCTGAAGCTCGCGCTTGCCGCGAACCCGCAGAACG
TGCGCGCGACGATATTGTCGGGCGACGCCGCGGCGGCGGCGGCCGATCACGCGGACGCGATCGAGCACTGGAAGCGCGTC
GAAGCGCAGAATCCGGCTTATCTGCCGCTCGTCGCCGACAAGCTGATGAAGGCCTATGTCGCGCTCGGCAAGCCGGTCGA
GGGTGCCGAGCTGCTGATGGGTTATGTCGAGCGTTATCCGTCGAACGACCTGCTCGAAATCGCGTATCAGCACATCGCCG
GGTTGCGCGGCCAGGAGGCCGCGCATACGCTCGCACGCACGCAGATGGAGAAGTCGCCCAACCTGTCCGGCATGCTGCAC
CTGCTCGACGCGCAGATCGCGGCCGCCGACGAGCCGCGCCGTAAGGAACTTGAAATGATGCGCGCGCTGATCAAGCAGCG
CACCAAAAATCTGCCACGCTATACGTGCCAGAATTGCGGTTTCCGGGCACGGCTTTTCTACTGGCAGTGCCCCGGATGCA
GCGGCTGGGAAACCTATGCGCCGCGCCGCGTCGAACCTGCGATGCCGGGCTGA

Upstream 100 bases:

>100_bases
AAACTCCGGTCGTCGTCGATCAGCCGCCGATGCCGCCCGTCATTTAATACGGACGCCGCGCGAATCTCGCGCGGTTTTCG
TCTCTGCTTCGATATTTCGC

Downstream 100 bases:

>100_bases
TCCCGGCGTGCGGCGCCGACGCGCTGCGGTTGCCGCCGGGTCCGGCCCGGCGGCCAAGTTAGTCAATTACCGGGACGTAC
CGGAACATCTATGAAAATCA

Product: tetratricopeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MDLDFWWLLAIPVAFALGWAASRYDLKNLLSESANLPRSYFRGLNFLLNEQPDKAIDAFIEVAKLDPETVELHFALGNLF
RRRGETDRAIRVHQNLLSRTDLPVNERDHALYELGQDFLKAGLLDRAEEAFHRLADGDYALGAQRALLTIYEIEKDWNKS
IDTAKRIESMSDKPLAIEIAQFHCELAQDALQRKNAAAAAEQLKLALAANPQNVRATILSGDAAAAAADHADAIEHWKRV
EAQNPAYLPLVADKLMKAYVALGKPVEGAELLMGYVERYPSNDLLEIAYQHIAGLRGQEAAHTLARTQMEKSPNLSGMLH
LLDAQIAAADEPRRKELEMMRALIKQRTKNLPRYTCQNCGFRARLFYWQCPGCSGWETYAPRRVEPAMPG

Sequences:

>Translated_390_residues
MDLDFWWLLAIPVAFALGWAASRYDLKNLLSESANLPRSYFRGLNFLLNEQPDKAIDAFIEVAKLDPETVELHFALGNLF
RRRGETDRAIRVHQNLLSRTDLPVNERDHALYELGQDFLKAGLLDRAEEAFHRLADGDYALGAQRALLTIYEIEKDWNKS
IDTAKRIESMSDKPLAIEIAQFHCELAQDALQRKNAAAAAEQLKLALAANPQNVRATILSGDAAAAAADHADAIEHWKRV
EAQNPAYLPLVADKLMKAYVALGKPVEGAELLMGYVERYPSNDLLEIAYQHIAGLRGQEAAHTLARTQMEKSPNLSGMLH
LLDAQIAAADEPRRKELEMMRALIKQRTKNLPRYTCQNCGFRARLFYWQCPGCSGWETYAPRRVEPAMPG
>Mature_390_residues
MDLDFWWLLAIPVAFALGWAASRYDLKNLLSESANLPRSYFRGLNFLLNEQPDKAIDAFIEVAKLDPETVELHFALGNLF
RRRGETDRAIRVHQNLLSRTDLPVNERDHALYELGQDFLKAGLLDRAEEAFHRLADGDYALGAQRALLTIYEIEKDWNKS
IDTAKRIESMSDKPLAIEIAQFHCELAQDALQRKNAAAAAEQLKLALAANPQNVRATILSGDAAAAAADHADAIEHWKRV
EAQNPAYLPLVADKLMKAYVALGKPVEGAELLMGYVERYPSNDLLEIAYQHIAGLRGQEAAHTLARTQMEKSPNLSGMLH
LLDAQIAAADEPRRKELEMMRALIKQRTKNLPRYTCQNCGFRARLFYWQCPGCSGWETYAPRRVEPAMPG

Specific function: Unknown

COG id: COG2956

COG function: function code G; Predicted N-acetylglucosaminyl transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI2367116, Length=375, Percent_Identity=38.4, Blast_Score=262, Evalue=3e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43850; Mature: 43850

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLDFWWLLAIPVAFALGWAASRYDLKNLLSESANLPRSYFRGLNFLLNEQPDKAIDAFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
EVAKLDPETVELHFALGNLFRRRGETDRAIRVHQNLLSRTDLPVNERDHALYELGQDFLK
HHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
AGLLDRAEEAFHRLADGDYALGAQRALLTIYEIEKDWNKSIDTAKRIESMSDKPLAIEIA
HHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHH
QFHCELAQDALQRKNAAAAAEQLKLALAANPQNVRATILSGDAAAAAADHADAIEHWKRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
EAQNPAYLPLVADKLMKAYVALGKPVEGAELLMGYVERYPSNDLLEIAYQHIAGLRGQEA
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
AHTLARTQMEKSPNLSGMLHLLDAQIAAADEPRRKELEMMRALIKQRTKNLPRYTCQNCG
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCC
FRARLFYWQCPGCSGWETYAPRRVEPAMPG
CEEEEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDLDFWWLLAIPVAFALGWAASRYDLKNLLSESANLPRSYFRGLNFLLNEQPDKAIDAFI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
EVAKLDPETVELHFALGNLFRRRGETDRAIRVHQNLLSRTDLPVNERDHALYELGQDFLK
HHHHCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
AGLLDRAEEAFHRLADGDYALGAQRALLTIYEIEKDWNKSIDTAKRIESMSDKPLAIEIA
HHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHH
QFHCELAQDALQRKNAAAAAEQLKLALAANPQNVRATILSGDAAAAAADHADAIEHWKRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
EAQNPAYLPLVADKLMKAYVALGKPVEGAELLMGYVERYPSNDLLEIAYQHIAGLRGQEA
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
AHTLARTQMEKSPNLSGMLHLLDAQIAAADEPRRKELEMMRALIKQRTKNLPRYTCQNCG
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCC
FRARLFYWQCPGCSGWETYAPRRVEPAMPG
CEEEEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]