Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350963

Identifier: 115350963

GI number: 115350963

Start: 999675

End: 999872

Strand: Direct

Name: 115350963

Synonym: Bamb_0909

Alternate gene names: NA

Gene position: 999675-999872 (Clockwise)

Preceding gene: 115350962

Following gene: 115350970

Centisome position: 28.11

GC content: 64.14

Gene sequence:

>198_bases
GTGGCCACGCTGCCGCTCGCCGGCATCTCCCGATGGAATCAGATTGCCCCGTTCGTTGGGGTATCACGGGAGACATGGAG
GAAGCGCTACCTCGAGGGCCGCGCGCCGCAGCCGATTCAGCTGACCCAACGCTGCACCGTCTGGCGGAATGAGGAGGTGC
ATCGCTGGTTGGCGGATCCAGTCAGCTATCAAGCCTGA

Upstream 100 bases:

>100_bases
TCGACATGGCTTGGCCACGGTGACGGACGTGGAACATGGGTAAAGCGAGTCTACGGGCGTGCGGCATTGGTCGAAGCGGA
GGCGCGCCATGCATAAGCAT

Downstream 100 bases:

>100_bases
ACGCGCGAACCAGACCTCCTCAATGCCAGCGAGCCGACCAATGTTGCCGCAGAGCGGTATCGATCTAGGCGAGCATGCGA
TACGTTTTGACGACCGGCGG

Product: phage transcriptional regulator AlpA

Products: NA

Alternate protein names: Prophage CP4-57 Regulatory Protein; Conserved Domain Protein; Prophage CP4-57 Regulatory

Number of amino acids: Translated: 65; Mature: 64

Protein sequence:

>65_residues
MATLPLAGISRWNQIAPFVGVSRETWRKRYLEGRAPQPIQLTQRCTVWRNEEVHRWLADPVSYQA

Sequences:

>Translated_65_residues
MATLPLAGISRWNQIAPFVGVSRETWRKRYLEGRAPQPIQLTQRCTVWRNEEVHRWLADPVSYQA
>Mature_64_residues
ATLPLAGISRWNQIAPFVGVSRETWRKRYLEGRAPQPIQLTQRCTVWRNEEVHRWLADPVSYQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7636; Mature: 7505

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLPLAGISRWNQIAPFVGVSRETWRKRYLEGRAPQPIQLTQRCTVWRNEEVHRWLADP
CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
VSYQA
CCCCC
>Mature Secondary Structure 
ATLPLAGISRWNQIAPFVGVSRETWRKRYLEGRAPQPIQLTQRCTVWRNEEVHRWLADP
CCCCCCCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
VSYQA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA