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The map label for this gene is yvdE [H]

Identifier: 115350942

GI number: 115350942

Start: 975445

End: 976728

Strand: Direct

Name: yvdE [H]

Synonym: Bamb_0888

Alternate gene names: 115350942

Gene position: 975445-976728 (Clockwise)

Preceding gene: 115350933

Following gene: 115350943

Centisome position: 27.43

GC content: 69.0

Gene sequence:

>1284_bases
ATGAATCCTCGTCAATCCAAATACGCGCGAGCGACGCACCAGACCATCGTCATGAGCGAAACCACGCCTTCCCCGGCCGG
TCTGACCGGCACCCCTTCCGCGTCTTCCCGTTCCCCCCGTTCCGATCCGGCACACGCGCCGGAGGTACCCGCCACGCAGT
CCTCCGTCGCGCAGGCTGCCGCGGCCGAGGATGTCGCGGCGGACGGCGCATCGCCGGTCACGGCGGCGTCGGAGCCGGGC
GCCGCGGGCACGACGCCCGCTGCCGAATCCGCTTCCGAACCCGCTTCCGAACCCGCTGCTGAACCCACTGCCGCGCCAAA
AGCCGGTGCCGCGCCGCCCGGTTTTGGCGCGCAGCCCGATTTCGACACGCCGCGCCCGCCGCCCGCGAGCGCGCAGAATG
CGCCGCCGGCTTACCTGAAGAACAGCGACACGCCATGGTCGGTGTTCGGCCGGATCGTCGCGGCACGTGCGCGCCGGCTG
TTCGACCGCGCCGGCCAGCGGATCACGCAGCGCACGTTGCGTATCGGCGTGTCGGCGCGGATCTTCCATCCGGAGCCGGG
TGCGAAGGGGTTGCGCGGCAAGACGCTGCAGTATCTCGAGGAATCGATCGCGCACTGGGTGATGTCGCGTGACGTGCTCG
TGTTCATGATTCCGACCGTCGGCCACCAGGGGATGCTGCACCCGAGCAACATCCGCCTGCGCGACTACGCGAAGCATCTC
GACGGCCTGCTGCTGCAAGGCGGCGCCGACGTGTCGCCGCAAACCTACGCGGCATCCGATGCGCGCCCCGAATGGCCGGG
TGACCGCGTGCGCGACATGTACGAGCTCGAGCTGTTTCACGAGTTCGTCGAGTCCGGCAAGCCGGTGCTCGGCGTGTGCC
GCGGCTGCCAGCTGATCAACGTCGCGTTCGGCGGCTCGCTGTACCAGGACATCGCGACCGACGTGCCGACCGCGCATCCG
CACGTGAGCGAGCATTACGACCAGCATCGCCATTCGATCCGCTTTCCCGACTCGTCGACGCTCGCGAGCATGTTTCCCGG
GCGCAGCGAAGCGATCGTGAACTCGATCCACCATCAGGCGATCCGCGATCTCGGCCGCGATCTGAACATCGAGGCCGTGT
CGGCCGGCGACGGGATCATCGAAGGCATCCGCTACCGGCGCGCGCCATTCGTCGTCGGCGTGCAATGGCACCCCGAGTTC
CATCGCGCGGGCGGCTCCGAGCTGCTCGACTGCACGCCGCTGCTCGACGCATTCCTGCGCGCGGCACGCGAAACGCGCCT
GTAG

Upstream 100 bases:

>100_bases
CAGACGACTTACTCTGACGCGTCCGGCGCCGCGTGCGACGACTTGCAACAATATCGACAGGATGTTGCAGGTTTACCGCG
CGATCGTGCACTGAAGCATA

Downstream 100 bases:

>100_bases
CCGGCGCTCGCATCGCGTCGCAGGCAGGCCGGCCGCATCCCGTAAATTCGAGATGCGGCCGTTTCGTTTTGAACGATAAT
CGCGACTCCCGATTCGTTCG

Product: peptidase C26

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MNPRQSKYARATHQTIVMSETTPSPAGLTGTPSASSRSPRSDPAHAPEVPATQSSVAQAAAAEDVAADGASPVTAASEPG
AAGTTPAAESASEPASEPAAEPTAAPKAGAAPPGFGAQPDFDTPRPPPASAQNAPPAYLKNSDTPWSVFGRIVAARARRL
FDRAGQRITQRTLRIGVSARIFHPEPGAKGLRGKTLQYLEESIAHWVMSRDVLVFMIPTVGHQGMLHPSNIRLRDYAKHL
DGLLLQGGADVSPQTYAASDARPEWPGDRVRDMYELELFHEFVESGKPVLGVCRGCQLINVAFGGSLYQDIATDVPTAHP
HVSEHYDQHRHSIRFPDSSTLASMFPGRSEAIVNSIHHQAIRDLGRDLNIEAVSAGDGIIEGIRYRRAPFVVGVQWHPEF
HRAGGSELLDCTPLLDAFLRAARETRL

Sequences:

>Translated_427_residues
MNPRQSKYARATHQTIVMSETTPSPAGLTGTPSASSRSPRSDPAHAPEVPATQSSVAQAAAAEDVAADGASPVTAASEPG
AAGTTPAAESASEPASEPAAEPTAAPKAGAAPPGFGAQPDFDTPRPPPASAQNAPPAYLKNSDTPWSVFGRIVAARARRL
FDRAGQRITQRTLRIGVSARIFHPEPGAKGLRGKTLQYLEESIAHWVMSRDVLVFMIPTVGHQGMLHPSNIRLRDYAKHL
DGLLLQGGADVSPQTYAASDARPEWPGDRVRDMYELELFHEFVESGKPVLGVCRGCQLINVAFGGSLYQDIATDVPTAHP
HVSEHYDQHRHSIRFPDSSTLASMFPGRSEAIVNSIHHQAIRDLGRDLNIEAVSAGDGIIEGIRYRRAPFVVGVQWHPEF
HRAGGSELLDCTPLLDAFLRAARETRL
>Mature_427_residues
MNPRQSKYARATHQTIVMSETTPSPAGLTGTPSASSRSPRSDPAHAPEVPATQSSVAQAAAAEDVAADGASPVTAASEPG
AAGTTPAAESASEPASEPAAEPTAAPKAGAAPPGFGAQPDFDTPRPPPASAQNAPPAYLKNSDTPWSVFGRIVAARARRL
FDRAGQRITQRTLRIGVSARIFHPEPGAKGLRGKTLQYLEESIAHWVMSRDVLVFMIPTVGHQGMLHPSNIRLRDYAKHL
DGLLLQGGADVSPQTYAASDARPEWPGDRVRDMYELELFHEFVESGKPVLGVCRGCQLINVAFGGSLYQDIATDVPTAHP
HVSEHYDQHRHSIRFPDSSTLASMFPGRSEAIVNSIHHQAIRDLGRDLNIEAVSAGDGIIEGIRYRRAPFVVGVQWHPEF
HRAGGSELLDCTPLLDAFLRAARETRL

Specific function: Unknown

COG id: COG2071

COG function: function code R; Predicted glutamine amidotransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081871, Length=244, Percent_Identity=27.4590163934426, Blast_Score=85, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017926
- InterPro:   IPR011697 [H]

Pfam domain/function: PF07722 Peptidase_C26 [H]

EC number: NA

Molecular weight: Translated: 45742; Mature: 45742

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPRQSKYARATHQTIVMSETTPSPAGLTGTPSASSRSPRSDPAHAPEVPATQSSVAQAA
CCCCHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AAEDVAADGASPVTAASEPGAAGTTPAAESASEPASEPAAEPTAAPKAGAAPPGFGAQPD
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FDTPRPPPASAQNAPPAYLKNSDTPWSVFGRIVAARARRLFDRAGQRITQRTLRIGVSAR
CCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
IFHPEPGAKGLRGKTLQYLEESIAHWVMSRDVLVFMIPTVGHQGMLHPSNIRLRDYAKHL
EECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
DGLLLQGGADVSPQTYAASDARPEWPGDRVRDMYELELFHEFVESGKPVLGVCRGCQLIN
CCEEECCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEE
VAFGGSLYQDIATDVPTAHPHVSEHYDQHRHSIRFPDSSTLASMFPGRSEAIVNSIHHQA
EHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCEECCCCCHHHHHHCCCHHHHHHHHHHHHH
IRDLGRDLNIEAVSAGDGIIEGIRYRRAPFVVGVQWHPEFHRAGGSELLDCTPLLDAFLR
HHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEECCHHHHCCCCCHHHHHHHHHHHHH
AARETRL
HHHHCCC
>Mature Secondary Structure
MNPRQSKYARATHQTIVMSETTPSPAGLTGTPSASSRSPRSDPAHAPEVPATQSSVAQAA
CCCCHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
AAEDVAADGASPVTAASEPGAAGTTPAAESASEPASEPAAEPTAAPKAGAAPPGFGAQPD
HHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FDTPRPPPASAQNAPPAYLKNSDTPWSVFGRIVAARARRLFDRAGQRITQRTLRIGVSAR
CCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
IFHPEPGAKGLRGKTLQYLEESIAHWVMSRDVLVFMIPTVGHQGMLHPSNIRLRDYAKHL
EECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHH
DGLLLQGGADVSPQTYAASDARPEWPGDRVRDMYELELFHEFVESGKPVLGVCRGCQLIN
CCEEECCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEE
VAFGGSLYQDIATDVPTAHPHVSEHYDQHRHSIRFPDSSTLASMFPGRSEAIVNSIHHQA
EHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCEECCCCCHHHHHHCCCHHHHHHHHHHHHH
IRDLGRDLNIEAVSAGDGIIEGIRYRRAPFVVGVQWHPEFHRAGGSELLDCTPLLDAFLR
HHHHCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEECCHHHHCCCCCHHHHHHHHHHHHH
AARETRL
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]