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The map label for this gene is rfaC [H]

Identifier: 115350903

GI number: 115350903

Start: 935296

End: 936294

Strand: Direct

Name: rfaC [H]

Synonym: Bamb_0849

Alternate gene names: 115350903

Gene position: 935296-936294 (Clockwise)

Preceding gene: 115350901

Following gene: 115350912

Centisome position: 26.3

GC content: 70.77

Gene sequence:

>999_bases
GTGAAACGCATCCTCATCGTGAAAGTGACGTCGCTCGGCGACGTCGTCCAGACGCTGCCCGTCGTCGCGGACCTCCATCG
CGCCTTCCCGGGTGTGACGGTCGACTGGGCCGTCGACGAATCCTGCGCGGAGGTCGTGCGCTGGCACCCGGGCGTGACCA
ATGTGCTTTGCGCGCCGCTGCGGCGGTTCAAGAAGATGCGCAACGGCGGCGACCTGAAGGCGATCTCCGCGTCGATCGGC
GCGCTGCGCGCGCATCGCTACGATGCGGTCATCGATCTGCACGGCGTGTACAAGAGCGCGATCATTTCGGTACTCGCGCG
CGCCGCGCGCCGCGTCGGCTACCAGACGCAGGATCTCGGCGAGACGGGCGCCCGTTTTGCATATTCGCATCGCTTCGGCC
CCCGGCCGGACTGCGACGCATGGCACGGGATGCGCGTGAGCGCCGGCGAGGCGCTGGGCTATGTGCCCGAAGGCATCGCC
ACGTACGGGATCGTCCCGCCGCAGGACGCGAGCCTGCCGCCCGCCGTGACCGACGGCACGCCGTTCATGCTGCTGTTTCA
CGCGACGTCCAATCCGGACAAGAAATGGCCGGCCGACCACTGGGCCGCGCTGGCCACCCGGATGATGGCGCGCGGCGTGC
GCGTGCTGTTGCCGTGGGGGTCGCCCGCCGAACATGACGACGCGAAGGATATCGCCGCGCGCGCGCCGGGCGCGATCGTG
CTGCCGGCGATGTCGGTGCGCGAACTCGGCGCGGCCCTCGGCCGGGCCGCGCTCGTGGTGGGCGTCGATACCGGCTTCGT
GCACATGGCGCACGCGCTGCAGCGGCCGACCGTGATGATTTTCGTCGCGACGTCGCGCCACCATTGCGGGATCGGCGGGG
CACCGAATGCGCTGTCGATCGGCGAGCCGGGCGCGCCGCCGTCGGTTGCGCAGGCACTCGATGCGATCGACGCGGTCGCA
CCGGCCTATGCCGCACGGCCCGCGCAGCTGACGGCCTAG

Upstream 100 bases:

>100_bases
AAAACGATGCATTTTGTTGCAAATGTAATGTCGGTGTAATGTTTGTGCCCGCCAAGCGTCGTTAGCATGGCGCAATGGTC
CGATATATCCCACAAAGAAC

Downstream 100 bases:

>100_bases
CGCCGGCGATTCGCGTGACCCGGCCGCGTGGAAGCGAAGCCGGCCGGTTCAGGCGAGCAGCGCTTCGAACGCGACCACCG
CGGCGATCGCCGCCAGATTG

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVTNVLCAPLRRFKKMRNGGDLKAISASIG
ALRAHRYDAVIDLHGVYKSAIISVLARAARRVGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGIA
TYGIVPPQDASLPPAVTDGTPFMLLFHATSNPDKKWPADHWAALATRMMARGVRVLLPWGSPAEHDDAKDIAARAPGAIV
LPAMSVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPNALSIGEPGAPPSVAQALDAIDAVA
PAYAARPAQLTA

Sequences:

>Translated_332_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVTNVLCAPLRRFKKMRNGGDLKAISASIG
ALRAHRYDAVIDLHGVYKSAIISVLARAARRVGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGIA
TYGIVPPQDASLPPAVTDGTPFMLLFHATSNPDKKWPADHWAALATRMMARGVRVLLPWGSPAEHDDAKDIAARAPGAIV
LPAMSVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPNALSIGEPGAPPSVAQALDAIDAVA
PAYAARPAQLTA
>Mature_332_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVTNVLCAPLRRFKKMRNGGDLKAISASIG
ALRAHRYDAVIDLHGVYKSAIISVLARAARRVGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGIA
TYGIVPPQDASLPPAVTDGTPFMLLFHATSNPDKKWPADHWAALATRMMARGVRVLLPWGSPAEHDDAKDIAARAPGAIV
LPAMSVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPNALSIGEPGAPPSVAQALDAIDAVA
PAYAARPAQLTA

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=282, Percent_Identity=35.8156028368794, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35147; Mature: 35147

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVTNVLCAPL
CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRFKKMRNGGDLKAISASIGALRAHRYDAVIDLHGVYKSAIISVLARAARRVGYQTQDLG
HHHHHHCCCCCEEHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGIATYGIVPPQDASLPPAVTDGT
HHHHHHEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
PFMLLFHATSNPDKKWPADHWAALATRMMARGVRVLLPWGSPAEHDDAKDIAARAPGAIV
CEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCEEE
LPAMSVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPNALSI
ECCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCC
GEPGAPPSVAQALDAIDAVAPAYAARPAQLTA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVTNVLCAPL
CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRFKKMRNGGDLKAISASIGALRAHRYDAVIDLHGVYKSAIISVLARAARRVGYQTQDLG
HHHHHHCCCCCEEHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGIATYGIVPPQDASLPPAVTDGT
HHHHHHEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
PFMLLFHATSNPDKKWPADHWAALATRMMARGVRVLLPWGSPAEHDDAKDIAARAPGAIV
CEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCEEE
LPAMSVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPNALSI
ECCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCC
GEPGAPPSVAQALDAIDAVAPAYAARPAQLTA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]