| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is pcp [H]
Identifier: 115350820
GI number: 115350820
Start: 852500
End: 854866
Strand: Direct
Name: pcp [H]
Synonym: Bamb_0766
Alternate gene names: 115350820
Gene position: 852500-854866 (Clockwise)
Preceding gene: 115350819
Following gene: 115350826
Centisome position: 23.97
GC content: 61.64
Gene sequence:
>2367_bases ATGAAAATTGCATATCTTGCCAGGGGAATGAGCGCGGCACTCATGGTGCTCGCGCTGGCCGGCTGCGGCGGCGACGACGC CAGTCCGGCGGTGGCTACGGCGCAGTCCGGCAAACTGTCGGCGCTGCGCGCCGCGGGCAACGCGGTGAGCGCGGCCCCGA TGAGCGCAACGGCGCCGGTGCATGTTGCGCTGGTACTCAAGCTGAACGACGAAGCTGGATTGAACCGCTTTATCGAGCAC GCGCGAACACCTGGCAGCGCCGGCTTCGGGGCCGTGCTGACCTCCGCGCAGATTGCCGCGCAGTACGCACCCACCACCGC CCAGGTGGCCACCGTGAAGGCCTATTTGGCAAGTAAGGGCTTCACGAACATCAAGGTGGCCGACAACAACATGATCGTGG AAGCCGATGCGCCGGCCGGGGTGATATCCGGTGTGTTCCGGACGACGCTCGTTCCGGTCGCGATGGCGGACGGCACCGGC ACGCATATCAATACCGCCCCGGAGACGGTGCCCGATGCGATCAGCGGGGTCGTTCGAGGGGTTCTCGGACTCGATACCGC GACTCGCCTGCGTCCGAATTTCGTACGCGCCTCCAACGCCGCTGCGGCTCCGACTGCAAATGCGTCGCCAACGATATCCG CGGTCACGGTCGGCCACAATCCGACGCAATTTCCCGGCATTTATTCCGTCGGTAGCACCCCGACCGCTGCCAACACCACG ATCGGCATTATTGCCGAAGGGGACGTGACGCAATCCGTCATCGACCTGGCAACGTTCGAAAGCCACAACCAGTTGCCTGC CGTACCCGTTTCAGTGATCCATGCCGGGCTGGCAAGCGCGGACACAAGCGCGAACATCGAATGGTCGCTCGATAGCCAGA CCATCGTGGGGATGTCCGGGGGCCTCAAGCAGCTCAATTTCTACGTTGCGCGGTCGTTTGCGTGGAGCGATATCGCGCTT GCAATCAATCGCGCCGTGAGCGACAACACCGCCCGTGTCATCAACATGTCGATCGGCGGTTGCGAGAACTGGGCGCCGAC GGCGGCCATCGACACGCTGTTCCAGCTCGCCGTTGCGCAAGGACAAACTTTCTCGGTCAGTTCCGGCGATTCAGGCAGCG TGGCATATGGCTGCAATGGTACGTCGGTGCAATACCCGGCGACATCCCCGTATGTCGTGGCCGTTGGCGGCACGACGCTC TATACGAACGGGAATGGAAACTACGCGGGCGAGACGGCCTGGGAAGCCAGCGGTGGCGGCATTAGTGGGTTTGAGCCGAT TCCTTCGTGGCAGTCGAACGTACCCGCACTCAAAGGCCGGGCGTCCCGAGGCATGCCGGACCTTGCATTCGATGCCGATC CCAACAGCGGCGCACAAATCATCGTCGGCGGACAACTCGAGACGGTGGGCGGCACGAGCCTTTCCGCGCCGCTCTTTAGC GCTACCTGGGCGCGCTTGCTATCCGGCAGTTGCACGACGAGCCTCGGATTCGCGGCGCCGAGAATCTACAGCGTGCAATC GACGACCGCTTCGATTTTTCACGATATCACCAACGGCAGCAATGGCGCATACAGTGCCGGTTCGGGATGGGACTTCGTGA CCGGTTGGGGCACCCCGAACGTCAGTCTGCTCTATTCGTCGCTATGCGGTTCGACGTCTGTCTCCTACAGCGGCGGAATC AACGAAGGTACGACACTGAAGCCCGGGCAAGCCGTCTATTCCGCGTCCAGGAATCATCAACTTCTGATGCAGGGCGACGG TAATCTCGTCCTTTACAACACGACGAATGGCGCCGCGGTGTGGAATACCCGGACGTATGGAAATGCCGGAGCGTACGCCG TCTTTCAGAACGATGGCAACTTCGTGGTCTACAGTGCGAATGGCGCGGTGCTGTGGTACTCGGCGACCTACGGACAGTCA GGCAGTCAACATCTTTCCGTGCAGGACGACGGCAACATGGTGATCTATCAATCATTCGTGCCAGTATTCGCGACCGCGAC CGGCACGTCGAGCTACGCGATCTCGGCGAGCGGTTCGGCTGTCTGGAACGGGGGCGTCGTCCTGAGTAGTGGCCAGAGTT TTACATCCGGCAATGGGGCGAACGTGCTCATCATGCAAGGCGACGGGAATTTGGTGCTGCTTCGCCAAGGTGTTCCGATT TGGAACTCGGGCACCTACGGTCATTCGGGCGCGTTTGGTGTAATGCAAGGGGATGGCAATCTGGTCGTCTACAGCCCGGC GGGTGCGCCGCTCTGGAACTCCGGTACCGGTGGCAATTCGGGCGCGACTGCTTACATTCAGGACGACGGCAACGTGGTGA TCTATACGCAACGGCCGAGTTGGAGCTCGAATACAGCAGGGGTCTAG
Upstream 100 bases:
>100_bases GGCCGATTCCTTCCTACCTTTCCCTCAAGGTAGCCGTGCGATTGCCGTAAAGAACAAAGGTGAAAAGCCAAATACGAGCT CTACGGTCCATACCAATCCG
Downstream 100 bases:
>100_bases TATCCCGCTCGTCGAATCGCGGTTGCGTGGTCACGGCTCGTCGGCGACGGCGGGCCGTGCCCCCTCACTGCCCGCGCCTT TCCTTCCTCACGACCATCCA
Product: curculin domain-containing protein
Products: NA
Alternate protein names: Pepstatin-insensitive carboxyl proteinase; Pseudomonapepsin [H]
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MKIAYLARGMSAALMVLALAGCGGDDASPAVATAQSGKLSALRAAGNAVSAAPMSATAPVHVALVLKLNDEAGLNRFIEH ARTPGSAGFGAVLTSAQIAAQYAPTTAQVATVKAYLASKGFTNIKVADNNMIVEADAPAGVISGVFRTTLVPVAMADGTG THINTAPETVPDAISGVVRGVLGLDTATRLRPNFVRASNAAAAPTANASPTISAVTVGHNPTQFPGIYSVGSTPTAANTT IGIIAEGDVTQSVIDLATFESHNQLPAVPVSVIHAGLASADTSANIEWSLDSQTIVGMSGGLKQLNFYVARSFAWSDIAL AINRAVSDNTARVINMSIGGCENWAPTAAIDTLFQLAVAQGQTFSVSSGDSGSVAYGCNGTSVQYPATSPYVVAVGGTTL YTNGNGNYAGETAWEASGGGISGFEPIPSWQSNVPALKGRASRGMPDLAFDADPNSGAQIIVGGQLETVGGTSLSAPLFS ATWARLLSGSCTTSLGFAAPRIYSVQSTTASIFHDITNGSNGAYSAGSGWDFVTGWGTPNVSLLYSSLCGSTSVSYSGGI NEGTTLKPGQAVYSASRNHQLLMQGDGNLVLYNTTNGAAVWNTRTYGNAGAYAVFQNDGNFVVYSANGAVLWYSATYGQS GSQHLSVQDDGNMVIYQSFVPVFATATGTSSYAISASGSAVWNGGVVLSSGQSFTSGNGANVLIMQGDGNLVLLRQGVPI WNSGTYGHSGAFGVMQGDGNLVVYSPAGAPLWNSGTGGNSGATAYIQDDGNVVIYTQRPSWSSNTAGV
Sequences:
>Translated_788_residues MKIAYLARGMSAALMVLALAGCGGDDASPAVATAQSGKLSALRAAGNAVSAAPMSATAPVHVALVLKLNDEAGLNRFIEH ARTPGSAGFGAVLTSAQIAAQYAPTTAQVATVKAYLASKGFTNIKVADNNMIVEADAPAGVISGVFRTTLVPVAMADGTG THINTAPETVPDAISGVVRGVLGLDTATRLRPNFVRASNAAAAPTANASPTISAVTVGHNPTQFPGIYSVGSTPTAANTT IGIIAEGDVTQSVIDLATFESHNQLPAVPVSVIHAGLASADTSANIEWSLDSQTIVGMSGGLKQLNFYVARSFAWSDIAL AINRAVSDNTARVINMSIGGCENWAPTAAIDTLFQLAVAQGQTFSVSSGDSGSVAYGCNGTSVQYPATSPYVVAVGGTTL YTNGNGNYAGETAWEASGGGISGFEPIPSWQSNVPALKGRASRGMPDLAFDADPNSGAQIIVGGQLETVGGTSLSAPLFS ATWARLLSGSCTTSLGFAAPRIYSVQSTTASIFHDITNGSNGAYSAGSGWDFVTGWGTPNVSLLYSSLCGSTSVSYSGGI NEGTTLKPGQAVYSASRNHQLLMQGDGNLVLYNTTNGAAVWNTRTYGNAGAYAVFQNDGNFVVYSANGAVLWYSATYGQS GSQHLSVQDDGNMVIYQSFVPVFATATGTSSYAISASGSAVWNGGVVLSSGQSFTSGNGANVLIMQGDGNLVLLRQGVPI WNSGTYGHSGAFGVMQGDGNLVVYSPAGAPLWNSGTGGNSGATAYIQDDGNVVIYTQRPSWSSNTAGV >Mature_788_residues MKIAYLARGMSAALMVLALAGCGGDDASPAVATAQSGKLSALRAAGNAVSAAPMSATAPVHVALVLKLNDEAGLNRFIEH ARTPGSAGFGAVLTSAQIAAQYAPTTAQVATVKAYLASKGFTNIKVADNNMIVEADAPAGVISGVFRTTLVPVAMADGTG THINTAPETVPDAISGVVRGVLGLDTATRLRPNFVRASNAAAAPTANASPTISAVTVGHNPTQFPGIYSVGSTPTAANTT IGIIAEGDVTQSVIDLATFESHNQLPAVPVSVIHAGLASADTSANIEWSLDSQTIVGMSGGLKQLNFYVARSFAWSDIAL AINRAVSDNTARVINMSIGGCENWAPTAAIDTLFQLAVAQGQTFSVSSGDSGSVAYGCNGTSVQYPATSPYVVAVGGTTL YTNGNGNYAGETAWEASGGGISGFEPIPSWQSNVPALKGRASRGMPDLAFDADPNSGAQIIVGGQLETVGGTSLSAPLFS ATWARLLSGSCTTSLGFAAPRIYSVQSTTASIFHDITNGSNGAYSAGSGWDFVTGWGTPNVSLLYSSLCGSTSVSYSGGI NEGTTLKPGQAVYSASRNHQLLMQGDGNLVLYNTTNGAAVWNTRTYGNAGAYAVFQNDGNFVVYSANGAVLWYSATYGQS GSQHLSVQDDGNMVIYQSFVPVFATATGTSSYAISASGSAVWNGGVVLSSGQSFTSGNGANVLIMQGDGNLVLLRQGVPI WNSGTYGHSGAFGVMQGDGNLVVYSPAGAPLWNSGTGGNSGATAYIQDDGNVVIYTQRPSWSSNTAGV
Specific function: Unknown
COG id: COG4934
COG function: function code O; Predicted protease
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S53 family [H]
Homologues:
Organism=Homo sapiens, GI5729770, Length=556, Percent_Identity=25, Blast_Score=81, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015366 - InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR009020 [H]
Pfam domain/function: PF00082 Peptidase_S8; PF09286 Pro-kuma_activ [H]
EC number: =3.4.21.100 [H]
Molecular weight: Translated: 80050; Mature: 80050
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50927 BULB_LECTIN ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIAYLARGMSAALMVLALAGCGGDDASPAVATAQSGKLSALRAAGNAVSAAPMSATAPV CEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEHHCCCCCCCCCCCCCCCE HVALVLKLNDEAGLNRFIEHARTPGSAGFGAVLTSAQIAAQYAPTTAQVATVKAYLASKG EEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC FTNIKVADNNMIVEADAPAGVISGVFRTTLVPVAMADGTGTHINTAPETVPDAISGVVRG CCEEEEECCCEEEECCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH VLGLDTATRLRPNFVRASNAAAAPTANASPTISAVTVGHNPTQFPGIYSVGSTPTAANTT HHCCCCHHHCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCE IGIIAEGDVTQSVIDLATFESHNQLPAVPVSVIHAGLASADTSANIEWSLDSQTIVGMSG EEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCEEEECCC GLKQLNFYVARSFAWSDIALAINRAVSDNTARVINMSIGGCENWAPTAAIDTLFQLAVAQ CHHHEEEEEEEECCCCCEEEEEEHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC GQTFSVSSGDSGSVAYGCNGTSVQYPATSPYVVAVGGTTLYTNGNGNYAGETAWEASGGG CCEEEECCCCCCCEEECCCCCEEECCCCCCEEEEECCEEEEECCCCCCCCCCCEECCCCC ISGFEPIPSWQSNVPALKGRASRGMPDLAFDADPNSGAQIIVGGQLETVGGTSLSAPLFS CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCEEEECCCCCCCCCHHH ATWARLLSGSCTTSLGFAAPRIYSVQSTTASIFHDITNGSNGAYSAGSGWDFVTGWGTPN HHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCC VSLLYSSLCGSTSVSYSGGINEGTTLKPGQAVYSASRNHQLLMQGDGNLVLYNTTNGAAV HHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCEEEEECCCCEEE WNTRTYGNAGAYAVFQNDGNFVVYSANGAVLWYSATYGQSGSQHLSVQDDGNMVIYQSFV EECCCCCCCCEEEEEECCCCEEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECC PVFATATGTSSYAISASGSAVWNGGVVLSSGQSFTSGNGANVLIMQGDGNLVLLRQGVPI CEEEEECCCCCEEEECCCCEEEECCEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCE WNSGTYGHSGAFGVMQGDGNLVVYSPAGAPLWNSGTGGNSGATAYIQDDGNVVIYTQRPS ECCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCC WSSNTAGV CCCCCCCC >Mature Secondary Structure MKIAYLARGMSAALMVLALAGCGGDDASPAVATAQSGKLSALRAAGNAVSAAPMSATAPV CEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEHHCCCCCCCCCCCCCCCE HVALVLKLNDEAGLNRFIEHARTPGSAGFGAVLTSAQIAAQYAPTTAQVATVKAYLASKG EEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC FTNIKVADNNMIVEADAPAGVISGVFRTTLVPVAMADGTGTHINTAPETVPDAISGVVRG CCEEEEECCCEEEECCCCCHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH VLGLDTATRLRPNFVRASNAAAAPTANASPTISAVTVGHNPTQFPGIYSVGSTPTAANTT HHCCCCHHHCCCCEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCE IGIIAEGDVTQSVIDLATFESHNQLPAVPVSVIHAGLASADTSANIEWSLDSQTIVGMSG EEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCEEEECCC GLKQLNFYVARSFAWSDIALAINRAVSDNTARVINMSIGGCENWAPTAAIDTLFQLAVAQ CHHHEEEEEEEECCCCCEEEEEEHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC GQTFSVSSGDSGSVAYGCNGTSVQYPATSPYVVAVGGTTLYTNGNGNYAGETAWEASGGG CCEEEECCCCCCCEEECCCCCEEECCCCCCEEEEECCEEEEECCCCCCCCCCCEECCCCC ISGFEPIPSWQSNVPALKGRASRGMPDLAFDADPNSGAQIIVGGQLETVGGTSLSAPLFS CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEECCEEEECCCCCCCCCHHH ATWARLLSGSCTTSLGFAAPRIYSVQSTTASIFHDITNGSNGAYSAGSGWDFVTGWGTPN HHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCC VSLLYSSLCGSTSVSYSGGINEGTTLKPGQAVYSASRNHQLLMQGDGNLVLYNTTNGAAV HHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCEEEEECCCCEEE WNTRTYGNAGAYAVFQNDGNFVVYSANGAVLWYSATYGQSGSQHLSVQDDGNMVIYQSFV EECCCCCCCCEEEEEECCCCEEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEEEECC PVFATATGTSSYAISASGSAVWNGGVVLSSGQSFTSGNGANVLIMQGDGNLVLLRQGVPI CEEEEECCCCCEEEECCCCEEEECCEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCE WNSGTYGHSGAFGVMQGDGNLVVYSPAGAPLWNSGTGGNSGATAYIQDDGNVVIYTQRPS ECCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCC WSSNTAGV CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7929375; 8576087; 10488127; 11747435; 11323721 [H]