Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 115350792

GI number: 115350792

Start: 818135

End: 818584

Strand: Direct

Name: yqgF [C]

Synonym: Bamb_0738

Alternate gene names: 115350792

Gene position: 818135-818584 (Clockwise)

Preceding gene: 115350791

Following gene: 115350793

Centisome position: 23.0

GC content: 68.0

Gene sequence:

>450_bases
ATGAGTGGCGCGAGTGCGCGCGATGCGACGCTGCTGGGGTTCGACTACGGCGAGAAGCGGATCGGAGTCGCAATCGGCAA
TGCGCTGACGCGCTCGGCCCGCGCGCTCGTCGTGATTCCCAACCTGAACCGCGAACACCGCTTCAAGGCGGTCGGCGACC
TGCTGGCCGAATGGCGGCCGGACGCGCTCGTCGTCGGCCTGCCGATGCATCCGGACGGCACGCCGCACGAGATGACGCAG
CAGGCGAAGCGCTTCGGCAACCAGCTGAACGGCCGCTTCGGGCTGCCTGTCACGTGGGTCGACGAACGCTATTCGTCGGT
CGAGGCCGAGGCCGGGCTGCGCGAGCGCAACGTGCGCGGGCGCGCCCGCGCCGAGATGCTCGATGCCGAGGCCGCGCGCG
TGATCCTTCAACAGTATCTCGATCAATTGTCCGACCATGAGCACCATTGA

Upstream 100 bases:

>100_bases
CGCGCATCGTGTTCGACACACCGGCCGAGGAGCGTTTCGAAGCCGCGCTCGGCCTGCTCGGTGTCAGCTCGTCGATGCTG
TCCGGCGAAGCAGGGCACGC

Downstream 100 bases:

>100_bases
CGCCGACGCGCTCTACCGCGTCCTGCTCGAGCAGATTCGCGACGCATACGGCACGGCCTTCGCCGAGCCGGGCGGCCCGC
GGCTCGCCGGCATCTACAGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSGASARDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVGLPMHPDGTPHEMTQ
QAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLDAEAARVILQQYLDQLSDHEHH

Sequences:

>Translated_149_residues
MSGASARDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVGLPMHPDGTPHEMTQ
QAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLDAEAARVILQQYLDQLSDHEHH
>Mature_148_residues
SGASARDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRPDALVVGLPMHPDGTPHEMTQQ
AKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLDAEAARVILQQYLDQLSDHEHH

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=41.044776119403, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BURA4 (B1YU28)

Other databases:

- EMBL:   CP001025
- RefSeq:   YP_001807467.1
- ProteinModelPortal:   B1YU28
- SMR:   B1YU28
- GeneID:   6178270
- GenomeReviews:   CP001025_GR
- KEGG:   bac:BamMC406_0755
- HOGENOM:   HBG607919
- OMA:   ERSIAMP
- ProtClustDB:   PRK00109
- BioCyc:   BAMB398577:BAMMC406_0755-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16595; Mature: 16464

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGASARDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRP
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCC
DALVVGLPMHPDGTPHEMTQQAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRG
CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCHHHCCCCC
RARAEMLDAEAARVILQQYLDQLSDHEHH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGASARDATLLGFDYGEKRIGVAIGNALTRSARALVVIPNLNREHRFKAVGDLLAEWRP
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCC
DALVVGLPMHPDGTPHEMTQQAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRG
CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCHHHCCCCC
RARAEMLDAEAARVILQQYLDQLSDHEHH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA