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The map label for this gene is rpoE [H]

Identifier: 115350781

GI number: 115350781

Start: 809186

End: 809701

Strand: Direct

Name: rpoE [H]

Synonym: Bamb_0727

Alternate gene names: 115350781

Gene position: 809186-809701 (Clockwise)

Preceding gene: 115350780

Following gene: 115350782

Centisome position: 22.75

GC content: 70.93

Gene sequence:

>516_bases
ATGAGCTACGAATCGGACCTGCTGGTGTGGCTGCCGCATCTCACGCGCTATGCGCGTGCGCTGACGGGCGACCGCGCCTG
GGCGGACGATCTCGTGCAGGACACGCTCGAGCGCGCGCTGAACCGGCCGCCGCGCGACGGCGGCAACCTGCGCGCGTGGC
TGCTGACGCTGCTGCGCCACCGTTTCATCGACCAGTTGCGCGCGCGGCACGAGATCGCGGTCGACGACGCGACCGCGCCA
TGGCAGACGATGGCCGCGCCCGCCGACGAGATCAGCGGCCTGATGCTGCGCGACGTGCAGCGCGCGCTGTACCGGCTGCC
GGTCGAACAGCGCGAGGTGCTGCTGCTGGTCGCACTGGAGGAGTTGAGCTATCGCGACGCCGCACAGGTGCTCGGCGTGC
CGGTGGGGACGGTGATGTCGCGGCTGTCGCGGGCGCGTGAACAGATGCGTGCGTTGCTGTCCGGCGAGCCGCCGGCGCAC
GGCACGGCCACGTTACGGGTGATCGGGAAGACATGA

Upstream 100 bases:

>100_bases
GCCGGTGACGCGGGCGGCGACGGGATCGGCGGCATGTGGCACGTCGCACGTCCCTGAAAAACGGACTGACTGACGGCGCG
GCGACGCGCGAGGCATCCGG

Downstream 100 bases:

>100_bases
TGGACGACGATCCGCGCAAACCTTCGAACGATCGGGACGATGCTGCATCGGCCCAGCTGCTGTCGGCGCTGCTCGACGGC
GAGCTGTCCGGGCAGGAGCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAP
WQTMAAPADEISGLMLRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPPAH
GTATLRVIGKT

Sequences:

>Translated_171_residues
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAP
WQTMAAPADEISGLMLRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPPAH
GTATLRVIGKT
>Mature_170_residues
SYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAPW
QTMAAPADEISGLMLRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPPAHG
TATLRVIGKT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19284; Mature: 19153

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRH
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
RFIDQLRARHEIAVDDATAPWQTMAAPADEISGLMLRDVQRALYRLPVEQREVLLLVALE
HHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPPAHGTATLRVIGKT
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
SYESDLLVWLPHLTRYARALTGDRAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRH
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
RFIDQLRARHEIAVDDATAPWQTMAAPADEISGLMLRDVQRALYRLPVEQREVLLLVALE
HHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELSYRDAAQVLGVPVGTVMSRLSRAREQMRALLSGEPPAHGTATLRVIGKT
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]