| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115350780
Identifier: 115350780
GI number: 115350780
Start: 808717
End: 809142
Strand: Direct
Name: 115350780
Synonym: Bamb_0726
Alternate gene names: NA
Gene position: 808717-809142 (Clockwise)
Preceding gene: 115350779
Following gene: 115350781
Centisome position: 22.74
GC content: 67.84
Gene sequence:
>426_bases ATGACGAAGTTTTTCGACGCCCGTCCGGCGGTGCCGTGCCGTAATGCCATGCCAAGGAGAACGGGAATGAAGACGATGCT GTTCGCCGTCGCGCTGACGGCCGCGATCGCGCGGCCCGCGGCCGCCGAGCCGCCGCAGGCCGGCAACGGGAAACTGGTCG ACGAAGATCACATGACGCTGTACGTGTTCGATCACGACGCGCCGGGCAAGAGCACCTGCACCGGCACCTGCGCGGCCAAC TGGCCGCCGGCGCTCGCCGACGCATACGACAAGGCGTCGGGTGCGCTGAGCCTCGTCACGCGCGACGACGGCAAGAAGCA ATGGGCGTACAACGGTCGCCCGCTGTATCGCTGGAAAATGGACCACAAGGCCGGTGACGCGGGCGGCGACGGGATCGGCG GCATGTGGCACGTCGCACGTCCCTGA
Upstream 100 bases:
>100_bases GGACGAATGGCGGGCGATCGGCGCGCTGCATGGAATAACCGCCCGCGGCCGTCCGTTTATATACCGAGTCGCGGCGCAAT CGGGCAGCGGGATAATGAAC
Downstream 100 bases:
>100_bases AAAACGGACTGACTGACGGCGCGGCGACGCGCGAGGCATCCGGATGAGCTACGAATCGGACCTGCTGGTGTGGCTGCCGC ATCTCACGCGCTATGCGCGT
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Protein; Secreted Repeat-Containing Protein; Signal Peptide Protein; Secreted Repeat Protein; Secreted Protein; Exported Protein
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MTKFFDARPAVPCRNAMPRRTGMKTMLFAVALTAAIARPAAAEPPQAGNGKLVDEDHMTLYVFDHDAPGKSTCTGTCAAN WPPALADAYDKASGALSLVTRDDGKKQWAYNGRPLYRWKMDHKAGDAGGDGIGGMWHVARP
Sequences:
>Translated_141_residues MTKFFDARPAVPCRNAMPRRTGMKTMLFAVALTAAIARPAAAEPPQAGNGKLVDEDHMTLYVFDHDAPGKSTCTGTCAAN WPPALADAYDKASGALSLVTRDDGKKQWAYNGRPLYRWKMDHKAGDAGGDGIGGMWHVARP >Mature_140_residues TKFFDARPAVPCRNAMPRRTGMKTMLFAVALTAAIARPAAAEPPQAGNGKLVDEDHMTLYVFDHDAPGKSTCTGTCAANW PPALADAYDKASGALSLVTRDDGKKQWAYNGRPLYRWKMDHKAGDAGGDGIGGMWHVARP
Specific function: Unknown
COG id: COG4315
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15162; Mature: 15031
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 7.1 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKFFDARPAVPCRNAMPRRTGMKTMLFAVALTAAIARPAAAEPPQAGNGKLVDEDHMTL CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEE YVFDHDAPGKSTCTGTCAANWPPALADAYDKASGALSLVTRDDGKKQWAYNGRPLYRWKM EEEECCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCEEECCCCEEEEEEC DHKAGDAGGDGIGGMWHVARP CCCCCCCCCCCCCCEEEECCC >Mature Secondary Structure TKFFDARPAVPCRNAMPRRTGMKTMLFAVALTAAIARPAAAEPPQAGNGKLVDEDHMTL CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEE YVFDHDAPGKSTCTGTCAANWPPALADAYDKASGALSLVTRDDGKKQWAYNGRPLYRWKM EEEECCCCCCCCEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCCCEEECCCCEEEEEEC DHKAGDAGGDGIGGMWHVARP CCCCCCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA