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The map label for this gene is qseD [H]

Identifier: 115350616

GI number: 115350616

Start: 630466

End: 631419

Strand: Direct

Name: qseD [H]

Synonym: Bamb_0562

Alternate gene names: 115350616

Gene position: 630466-631419 (Clockwise)

Preceding gene: 115350614

Following gene: 115350617

Centisome position: 17.73

GC content: 69.29

Gene sequence:

>954_bases
ATGGAACTGAAATGGCTCGAAGACTTCGTCTCGCTCGCGGAAACGCGCAGCTTTAGCCGGTCCGCCGAACTGCGGCACGT
GTCGCAGCCCGCGTTCTCGCGGCGCATCCAGGCGCTGGAAGCCTGGCTCGCGACCGAACTGATCGACCGTTCGGTCTATC
CGACGCGGCTCACGCAGGCCGGCCAGATCTTCTACGAGCAGGCGCTGACGATGCTGTCGCAGGCGCACGAGGCGCGCACG
CTGCTGCGCGGCCACGTCGGCGCGCCGGTGCCGACGATCGAGTTCGCGGTGCCGCACACGCTGTCGCTCACGTATTTCCC
GCGCTGGCTGCAGCGGATCGAGGCGAAGATGGGGCAGGTCCACACGCGGCTGCGCGCGCTGAACGTGCACGATGCCGTGC
TGTCGCTCGTCGAGGGCGGCTGCGATCTCGTGATGGGCTACCACCACCCGAGCCACCCGGTCGCGCTCGACCCGGCGCGC
TACGACATGCTGATCCTCGGCAGCGAGCCGATCAGCGCGTTCTCGGCGCCGGGCCGCGCCGGCCGGCCGCGCTACACGCT
GCCGGGCACGGCCGATGCGCGCGTGCCGTACCTGTCGTATACGCCGAACGCGTATCTCGGCCGGATGACCGAAGTCATCG
TTGCGAACGCACCGACGCGGCTGTTCCTCGATCGCGTGTACGAAACCGACATGGCCGAAGGGCTGAAGGCGATGGCGCTC
GCGGGCCACGGCGTCGCGTTCCTGCCGCACAGCGCGGTCGAGGACGCGGTGGCCGGCGGCCGGCTGATCCGGCTCGACCG
TTCCGCGCGCGGCGGCACGCATCCGTACACGCTGACGATGGAGATTCGCCTGTACTGCGACAAGCTCGCGCTGCAGGGCG
ACGATCCGCGCCAGAAACTGGTGCGCGCGTTGTGGGAAGTCGTGCGCGACGAACTACGCGACACGGCCGAATGA

Upstream 100 bases:

>100_bases
CCCCGCCGTCGACCCCACCGTCGACCCCACCGCCGACCCACACCCGCCCGCCGGTAGAATGCAGGCTTCATCCCGACCGC
CGCCCGCCGCGCCCGCCTGC

Downstream 100 bases:

>100_bases
TGGAACCGAGCACGGCCGCGCGCGCCTGACGACGAGCTTGCCGCGCCTGTCGGACAGCTGTCCGGCGAGCGTCCCGCATA
TTGCACCAACGATTTTCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQIFYEQALTMLSQAHEART
LLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPAR
YDMLILGSEPISAFSAPGRAGRPRYTLPGTADARVPYLSYTPNAYLGRMTEVIVANAPTRLFLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVAGGRLIRLDRSARGGTHPYTLTMEIRLYCDKLALQGDDPRQKLVRALWEVVRDELRDTAE

Sequences:

>Translated_317_residues
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQIFYEQALTMLSQAHEART
LLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPAR
YDMLILGSEPISAFSAPGRAGRPRYTLPGTADARVPYLSYTPNAYLGRMTEVIVANAPTRLFLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVAGGRLIRLDRSARGGTHPYTLTMEIRLYCDKLALQGDDPRQKLVRALWEVVRDELRDTAE
>Mature_317_residues
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQAGQIFYEQALTMLSQAHEART
LLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQVHTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPAR
YDMLILGSEPISAFSAPGRAGRPRYTLPGTADARVPYLSYTPNAYLGRMTEVIVANAPTRLFLDRVYETDMAEGLKAMAL
AGHGVAFLPHSAVEDAVAGGRLIRLDRSARGGTHPYTLTMEIRLYCDKLALQGDDPRQKLVRALWEVVRDELRDTAE

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=268, Percent_Identity=33.955223880597, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787879, Length=266, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790399, Length=151, Percent_Identity=31.1258278145695, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI145693193, Length=269, Percent_Identity=25.6505576208178, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35410; Mature: 35410

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GQIFYEQALTMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHH
HTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPARYDMLILGSEPISAFSAPGRA
HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCCCEEEECCCCCHHHCCCCCC
GRPRYTLPGTADARVPYLSYTPNAYLGRMTEVIVANAPTRLFLDRVYETDMAEGLKAMAL
CCCCEECCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AGHGVAFLPHSAVEDAVAGGRLIRLDRSARGGTHPYTLTMEIRLYCDKLALQGDDPRQKL
CCCCEEECCCHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEEHHHHCCCCCHHHHH
VRALWEVVRDELRDTAE
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELKWLEDFVSLAETRSFSRSAELRHVSQPAFSRRIQALEAWLATELIDRSVYPTRLTQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GQIFYEQALTMLSQAHEARTLLRGHVGAPVPTIEFAVPHTLSLTYFPRWLQRIEAKMGQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHH
HTRLRALNVHDAVLSLVEGGCDLVMGYHHPSHPVALDPARYDMLILGSEPISAFSAPGRA
HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEECCCCCCEEEECCCCCHHHCCCCCC
GRPRYTLPGTADARVPYLSYTPNAYLGRMTEVIVANAPTRLFLDRVYETDMAEGLKAMAL
CCCCEECCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
AGHGVAFLPHSAVEDAVAGGRLIRLDRSARGGTHPYTLTMEIRLYCDKLALQGDDPRQKL
CCCCEEECCCHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEEHHHHCCCCCHHHHH
VRALWEVVRDELRDTAE
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]