| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is secA [H]
Identifier: 115350526
GI number: 115350526
Start: 534985
End: 537780
Strand: Direct
Name: secA [H]
Synonym: Bamb_0472
Alternate gene names: 115350526
Gene position: 534985-537780 (Clockwise)
Preceding gene: 115350524
Following gene: 115350527
Centisome position: 15.04
GC content: 64.95
Gene sequence:
>2796_bases ATGACAACCGGTTTTCTCCAGAAAATTTTTGGCAGCCGCAACCAGCGGCTCGTCAAGCAATATCAAAAGACCGTCGAGAC GATCAATGCGCTCGAAACGCAGATCGAGCAGCTGACGGACGACCAGTTGCGCGGCAAGACGGACGAGTTCCGCCAGCGGG TCGCGGCCGGGGAGTCGCTCGACAAGCTGCTGCCCGAGGCGTTCGCGGTCTGCCGGGAGGCGAGCCGCCGCGTGCTGAAG ATGCGCCACTTCGACGTGCAGCTGATCGGCGGCATGGTGCTCCACTACGGCAAGATCGCGGAAATGCGCACCGGCGAGGG CAAGACGCTCGTCGCGACGCTGCCCGTGTACCTGAATGCGCTGGCCGGCCGCGGCGTGCACGTCGTGACGGTCAACGACT ACCTCGCCCAGCGCGACGCCGAATGGATGGCGCGTCTCTACAACTTCCTCGGTCTGTCGGTCGGCATCAACCTGTCCGGC ATGGAGCACGAGCAGAAGCAGCAGGCCTACGCGTCGGACATCACCTACGGTACGAACAACGAGTTCGGCTTTGACTACCT GCGCGACAACATGGTCTACGAGACCGAAGCGCGCGTGCAGCGGGCACTGAACTTCGCGGTCGTCGACGAAGTGGACTCGA TCCTGATCGACGAGGCGCGTACGCCGCTGATCATCTCGGGCCAGGCCGAAGATCACACCGAACTGTACGTGCGGATGAAC GCGCTGCCGCCGCTGCTCGAGCGCCAGATCGGCGAGGAGAAGGCGGACGGCACGGGCGTCGAGAAGCCGGGCGACTACAC GCTGGACGAAAAATCGCGCCAGGTGTTCCTGACGGAGTCGGGCCACGAGAAGGCCGAGCGACTGCTCGCCGAGTGGGGCC TGATCGGCGAGGGCGAGAGCCTGTACGCGCCGCAGAACATCACGCTGATGCACCATGTGTATGCCGCGCTGCGCGCGCAC ACGCTGTTCTACAAGGACCAGCACTACGTCGTGCAGAACGGCGAAGTGGTGATCGTCGACGAATTCACGGGCCGCCTGAT GGCGGGCCGCCGCTGGTCCGACGGCCTGCACCAGGCGGTCGAGGCGAAGGAACACGTGAAGATCCAGAGCGAGAACCAGA CGCTCGCCTCGATCACGTTCCAGAACTACTTCCGGATGTACGCGAAGCTCGCGGGCATGACGGGTACGGCGGACACCGAA GCGTACGAATTCAACGAGATCTACGGCCTCGAGACGGTCGTGATCCCGACCAACCGCCCGCCGAAGCGGATCGACAAGCA GGACCAGATCTACAAGACCGCCAAGGAGCGCTACGACGCGGTGATCCGCGACATTCGCGAGTGCTACGAGCGCGGTCAGC CGGTGCTGGTCGGCACGACGTCGATCGAGAACTCGGAACTGCTGTCGCACCTGCTGAAGCAGGCCGGGCTGCCGCACGAA GTGCTGAACGCGAAGCAGCACGAGCGTGAAGCCGCGATTGTCGCGGAAGCCGGCCGTCCGAAACGCATCACGATCGCGAC CAACATGGCCGGCCGCGGTACCGACATCGTGCTCGGCGGCAACGCGGAGAAGCAGGCGGCGTTCATCGAAGCCGACGAAG CGATCCCGGCCGACGAAAAGGCGCGCCGCATCAAGCAGCTGCACGACGAGTGGGAGACGCTGCACGAGCAGGTGAAGGCC GCGGGCGGCCTGCACATCATCGGCACCGAGCGCCACGAATCGCGCCGGATCGACAACCAGCTGCGCGGCCGTGCGGGCCG CCAGGGCGACCCGGGTTCGTCGCGCTTCTATCTGTCGCTGGACGATCCGCTGCTGCGCATCTTCGCGGGCGACCGCGTGC GTTCGATCATGGATCGCCTGAAGATGCCCGAAGGCGAGGCGATCGAGGCCGGCATCGTCACGCGTTCGATCGAATCCGCG CAGCGCAAGGTCGAGGCACGCAACTTCGACATCCGCAAGCAGCTGCTCGAATACGACGACGTGTCGAACGACCAGCGCAA GGTGATCTACCAGCAGCGCAACGAACTGCTCGAAGCCCACGACATCACCGAGACGATCTCGGCGATGCGTCACGGCGTGA TCACCGAAGTCGTCCGCCAGTTCGTGCCTGAAGGCAGCATCGAGGAACAGTGGGACGTGCCCGAGCTCGAGGAAGCGCTG CGCAACGACTGGCAGCTCGACCTCGCGATCCAGGAAATGGTGAACGAGTCGTCGTCGATCACGGCCGACGAGATTCTCGA CGCCGTGACGACCGCCGCCGACGAGCAGTACGAGGCGAAGGTCGCGATGGTCGGCCGCGAATCGTTCAGTGCGTTCGAGC GTTCGGTGATGCTGCAGACGGTCGACCGCCTCTGGCGCGAGCACCTCGCGGCACTCGACCACCTGCGTCAGGGCATCCAC CTGCGCGGCTATGCGCAGAAGAACCCGAAGCAGGAATACAAGCGCGAAGCGTTCGAGCTGTTCGCCGCGATGCTCGATGC GATCAAGCAGGAAGTCACGCGCATCGTGATGAACGTGCAGATCCAGTCGCCCGAGCAGCTCGAGGAAGCCGCCGAGCAGA TCGAGGAGCGCACCGGTCATCTCGAGAACGTCGAGTATCAGCACGCCGACTACGCGGAATCCGGCGCGCCGGTGGCGAAC GTCGCGGCCGCCACGGCGGCCACCGCGACGGCTGACATGGTCGGCAGCGCGATGACCCACGGCCACGCCGGCGAGCTGCC GAAGGTCGGTCGCAACGACCCGTGCCCGTGCGGCAGCGGCAAGAAGTACAAGCAATGTCACGGGAAGCTGTCATGA
Upstream 100 bases:
>100_bases TCCTCGTTTGATTCCACTAATTCGCTAAGCCGCCGAGGCTCGGGCGTCGGGGCGCGCAACACGCGCCGGGCGCCGGTGCT GCGACGCAGGATCCGATCCG
Downstream 100 bases:
>100_bases TCGGCGGCGGCGCGCATCGGCGTGCCGCTTCATCCGCAGCTTCGAGTCAGTGAAGTGAGTTGCGGCGGCCGCTCGTGCGG CCGTCGGTTCTTCCAATCAA
Product: preprotein translocase subunit SecA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 931; Mature: 930
Protein sequence:
>931_residues MTTGFLQKIFGSRNQRLVKQYQKTVETINALETQIEQLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLK MRHFDVQLIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSG MEHEQKQQAYASDITYGTNNEFGFDYLRDNMVYETEARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMN ALPPLLERQIGEEKADGTGVEKPGDYTLDEKSRQVFLTESGHEKAERLLAEWGLIGEGESLYAPQNITLMHHVYAALRAH TLFYKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTE AYEFNEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRECYERGQPVLVGTTSIENSELLSHLLKQAGLPHE VLNAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNAEKQAAFIEADEAIPADEKARRIKQLHDEWETLHEQVKA AGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESA QRKVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETISAMRHGVITEVVRQFVPEGSIEEQWDVPELEEAL RNDWQLDLAIQEMVNESSSITADEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIH LRGYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQIQSPEQLEEAAEQIEERTGHLENVEYQHADYAESGAPVAN VAAATAATATADMVGSAMTHGHAGELPKVGRNDPCPCGSGKKYKQCHGKLS
Sequences:
>Translated_931_residues MTTGFLQKIFGSRNQRLVKQYQKTVETINALETQIEQLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLK MRHFDVQLIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSG MEHEQKQQAYASDITYGTNNEFGFDYLRDNMVYETEARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMN ALPPLLERQIGEEKADGTGVEKPGDYTLDEKSRQVFLTESGHEKAERLLAEWGLIGEGESLYAPQNITLMHHVYAALRAH TLFYKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTE AYEFNEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRECYERGQPVLVGTTSIENSELLSHLLKQAGLPHE VLNAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNAEKQAAFIEADEAIPADEKARRIKQLHDEWETLHEQVKA AGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESA QRKVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETISAMRHGVITEVVRQFVPEGSIEEQWDVPELEEAL RNDWQLDLAIQEMVNESSSITADEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIH LRGYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQIQSPEQLEEAAEQIEERTGHLENVEYQHADYAESGAPVAN VAAATAATATADMVGSAMTHGHAGELPKVGRNDPCPCGSGKKYKQCHGKLS >Mature_930_residues TTGFLQKIFGSRNQRLVKQYQKTVETINALETQIEQLTDDQLRGKTDEFRQRVAAGESLDKLLPEAFAVCREASRRVLKM RHFDVQLIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNALAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGM EHEQKQQAYASDITYGTNNEFGFDYLRDNMVYETEARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMNA LPPLLERQIGEEKADGTGVEKPGDYTLDEKSRQVFLTESGHEKAERLLAEWGLIGEGESLYAPQNITLMHHVYAALRAHT LFYKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAVEAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEA YEFNEIYGLETVVIPTNRPPKRIDKQDQIYKTAKERYDAVIRDIRECYERGQPVLVGTTSIENSELLSHLLKQAGLPHEV LNAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNAEKQAAFIEADEAIPADEKARRIKQLHDEWETLHEQVKAA GGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLDDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESAQ RKVEARNFDIRKQLLEYDDVSNDQRKVIYQQRNELLEAHDITETISAMRHGVITEVVRQFVPEGSIEEQWDVPELEEALR NDWQLDLAIQEMVNESSSITADEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQTVDRLWREHLAALDHLRQGIHL RGYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQIQSPEQLEEAAEQIEERTGHLENVEYQHADYAESGAPVANV AAATAATATADMVGSAMTHGHAGELPKVGRNDPCPCGSGKKYKQCHGKLS
Specific function: Part of the Sec protein translocase complex. Interacts with the secYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the pr
COG id: COG0653
COG function: function code U; Preprotein translocase subunit SecA (ATPase, RNA helicase)
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasm (By similarity). Note=Distribution is 50-50 (By similarity) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secA family [H]
Homologues:
Organism=Escherichia coli, GI1786287, Length=933, Percent_Identity=59.2711682743837, Blast_Score=1098, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004027 - InterPro: IPR000185 - InterPro: IPR020937 - InterPro: IPR011115 - InterPro: IPR014018 - InterPro: IPR011130 - InterPro: IPR011116 [H]
Pfam domain/function: PF02810 SEC-C; PF07517 SecA_DEAD; PF01043 SecA_PP_bind; PF07516 SecA_SW [H]
EC number: NA
Molecular weight: Translated: 104899; Mature: 104767
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS01312 SECA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGFLQKIFGSRNQRLVKQYQKTVETINALETQIEQLTDDQLRGKTDEFRQRVAAGESL CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH DKLLPEAFAVCREASRRVLKMRHFDVQLIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEHHHHHHH LAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHEQKQQAYASDITYGTNN HCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC EFGFDYLRDNMVYETEARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMN CCCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEC ALPPLLERQIGEEKADGTGVEKPGDYTLDEKSRQVFLTESGHEKAERLLAEWGLIGEGES CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCC LYAPQNITLMHHVYAALRAHTLFYKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAV EECCCCCHHHHHHHHHHHHHHHEEECCEEEEECCCEEEEECCCCHHHCCCCCHHHHHHHH EAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEFNEIYGLETVVIPTNRP HHHHHCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHCCCCEEEEECCCCC PKRIDKQDQIYKTAKERYDAVIRDIRECYERGQPVLVGTTSIENSELLSHLLKQAGLPHE HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCHH VLNAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNAEKQAAFIEADEAIPADEK HHCCHHHHHHHHHEECCCCCCEEEEEECCCCCCCEEEECCCCCHHHHEEECCCCCCCHHH ARRIKQLHDEWETLHEQVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEE DDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDD CCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC VSNDQRKVIYQQRNELLEAHDITETISAMRHGVITEVVRQFVPEGSIEEQWDVPELEEAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH RNDWQLDLAIQEMVNESSSITADEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQT HCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VDRLWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQ HHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE IQSPEQLEEAAEQIEERTGHLENVEYQHADYAESGAPVANVAAATAATATADMVGSAMTH CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC GHAGELPKVGRNDPCPCGSGKKYKQCHGKLS CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC >Mature Secondary Structure TTGFLQKIFGSRNQRLVKQYQKTVETINALETQIEQLTDDQLRGKTDEFRQRVAAGESL CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH DKLLPEAFAVCREASRRVLKMRHFDVQLIGGMVLHYGKIAEMRTGEGKTLVATLPVYLNA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEHHHHHHH LAGRGVHVVTVNDYLAQRDAEWMARLYNFLGLSVGINLSGMEHEQKQQAYASDITYGTNN HCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC EFGFDYLRDNMVYETEARVQRALNFAVVDEVDSILIDEARTPLIISGQAEDHTELYVRMN CCCHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEC ALPPLLERQIGEEKADGTGVEKPGDYTLDEKSRQVFLTESGHEKAERLLAEWGLIGEGES CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCC LYAPQNITLMHHVYAALRAHTLFYKDQHYVVQNGEVVIVDEFTGRLMAGRRWSDGLHQAV EECCCCCHHHHHHHHHHHHHHHEEECCEEEEECCCEEEEECCCCHHHCCCCCHHHHHHHH EAKEHVKIQSENQTLASITFQNYFRMYAKLAGMTGTADTEAYEFNEIYGLETVVIPTNRP HHHHHCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHCCCCEEEEECCCCC PKRIDKQDQIYKTAKERYDAVIRDIRECYERGQPVLVGTTSIENSELLSHLLKQAGLPHE HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCHH VLNAKQHEREAAIVAEAGRPKRITIATNMAGRGTDIVLGGNAEKQAAFIEADEAIPADEK HHCCHHHHHHHHHEECCCCCCEEEEEECCCCCCCEEEECCCCCHHHHEEECCCCCCCHHH ARRIKQLHDEWETLHEQVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEE DDPLLRIFAGDRVRSIMDRLKMPEGEAIEAGIVTRSIESAQRKVEARNFDIRKQLLEYDD CCHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC VSNDQRKVIYQQRNELLEAHDITETISAMRHGVITEVVRQFVPEGSIEEQWDVPELEEAL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH RNDWQLDLAIQEMVNESSSITADEILDAVTTAADEQYEAKVAMVGRESFSAFERSVMLQT HCCCEEHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH VDRLWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAAMLDAIKQEVTRIVMNVQ HHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE IQSPEQLEEAAEQIEERTGHLENVEYQHADYAESGAPVANVAAATAATATADMVGSAMTH CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC GHAGELPKVGRNDPCPCGSGKKYKQCHGKLS CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA