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The map label for this gene is lpxC

Identifier: 115350524

GI number: 115350524

Start: 533242

End: 534159

Strand: Direct

Name: lpxC

Synonym: Bamb_0470

Alternate gene names: 115350524

Gene position: 533242-534159 (Clockwise)

Preceding gene: 115350523

Following gene: 115350526

Centisome position: 14.99

GC content: 63.83

Gene sequence:

>918_bases
ATGCTGAAGCAGCGCACCATCAAATCGATCGTGAAGACCGTGGGTATCGGTCTGCACTCGGGCCGCAAGGTTGAACTGAC
GCTCCGTCCGGCCGCGCCGGGCACGGGGATCGTTTTCTCGCGCGTCGATCTGCCCACGCCTGTCGACATTCCGGCATCCG
CGATGTCGATCGGCGACACGCGGCTCGCGTCGGTGCTGCAGAAGGATGGCGCGCGCGTGTCGACCGTCGAGCACCTGATG
TCGGCGTGCGCCGGCCTCGGCATCGACAACCTCTATGTCGACGTGACGGCCGAGGAAATCCCGATCATGGATGGCAGCGC
CGCGTCCTTCGTGTTCCTGATCCAGTCCGCGGGCATCGAGGAGCAGAACGCGCCGAAGCGCTTCATCAAGGTGACCAAGC
CGGTCGAAATCCGCGACGGCGACAAGTTCGCGCGTCTCGAGCCGTATTTCGGCTTCAAGCTGAAGTTCACGATCGACTTC
CGTCATCCTGCCGTCGACAAGACCGGCCAGGAGCTCGAGGTCGACTTCGCGAACACGTCGTACGTGCGCGAGATCGCGCG
CGCGCGCACGTTCGGCTTTGCGCACGAAGTCGAAATGATGCGCGAGCTGGGTCTCGCACGCGGCGGCAGCATGGACAACG
CGATCGTGCTCGACGAATACCGGATCCTGAACAACGACGGGCTGCGCTACGACGACGAGTTCGTGAAGCACAAGATGCTC
GACGCGATCGGCGACCTGTACGTGGTCGGCCATCCGCTGCTGGCGTCGTACACGGCATACAAGTCGGGTCACGGGCTGAA
CAACGCGCTGCTGCGCGAACTGCTCGCCCACGAAGACGCGTACGAGATCGTCACGTTCGACGATCCGCAGGCCGCGCCGA
AAGGATTTGCGTTCGACGCGCAGACGGCCTTCGCCTGA

Upstream 100 bases:

>100_bases
GATACGCAGTTTCCAACAGCGTTGAATAGGGAATTACGCTATAATCTCACCTATCGAATATAACTCCTGATTGATATTCT
CAATCAAGTTGAAGAAGACC

Downstream 100 bases:

>100_bases
TCGGCGTTCGTCCCGAGCGAATAAAAAAAGCGACCTCCGGGTCGCTTTTTTGCTGGGCGGCCGCGGTCGGCGGCGCGTTC
AGCCCGACGACTTCGCGCCG

Product: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

Products: UDP-3-O-(3-Hydroxytetradecanoyl)- Glucosamine; Acetate. [C]

Alternate protein names: UDP-3-O-acyl-GlcNAc deacetylase [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPGTGIVFSRVDLPTPVDIPASAMSIGDTRLASVLQKDGARVSTVEHLM
SACAGLGIDNLYVDVTAEEIPIMDGSAASFVFLIQSAGIEEQNAPKRFIKVTKPVEIRDGDKFARLEPYFGFKLKFTIDF
RHPAVDKTGQELEVDFANTSYVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRYDDEFVKHKML
DAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPQAAPKGFAFDAQTAFA

Sequences:

>Translated_305_residues
MLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPGTGIVFSRVDLPTPVDIPASAMSIGDTRLASVLQKDGARVSTVEHLM
SACAGLGIDNLYVDVTAEEIPIMDGSAASFVFLIQSAGIEEQNAPKRFIKVTKPVEIRDGDKFARLEPYFGFKLKFTIDF
RHPAVDKTGQELEVDFANTSYVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRYDDEFVKHKML
DAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPQAAPKGFAFDAQTAFA
>Mature_305_residues
MLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPGTGIVFSRVDLPTPVDIPASAMSIGDTRLASVLQKDGARVSTVEHLM
SACAGLGIDNLYVDVTAEEIPIMDGSAASFVFLIQSAGIEEQNAPKRFIKVTKPVEIRDGDKFARLEPYFGFKLKFTIDF
RHPAVDKTGQELEVDFANTSYVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRYDDEFVKHKML
DAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPQAAPKGFAFDAQTAFA

Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]

COG id: COG0774

COG function: function code M; UDP-3-O-acyl-N-acetylglucosamine deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lpxC family [H]

Homologues:

Organism=Escherichia coli, GI1786285, Length=304, Percent_Identity=54.2763157894737, Blast_Score=354, Evalue=3e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR004463
- InterPro:   IPR011334
- InterPro:   IPR015870 [H]

Pfam domain/function: PF03331 LpxC [H]

EC number: 3.5.1.- [C]

Molecular weight: Translated: 33511; Mature: 33511

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPGTGIVFSRVDLPTPVDIPASAMSIGDT
CCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHHCCHH
RLASVLQKDGARVSTVEHLMSACAGLGIDNLYVDVTAEEIPIMDGSAASFVFLIQSAGIE
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCHHHEEEEEECCCCC
EQNAPKRFIKVTKPVEIRDGDKFARLEPYFGFKLKFTIDFRHPAVDKTGQELEVDFANTS
CCCCCHHHEEECCCEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCHH
YVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRYDDEFVKHKML
HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEECEEEECCCCCCCCHHHHHHHHH
DAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPQAAPKGFAFDA
HHHCCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEECC
QTAFA
HHCCC
>Mature Secondary Structure
MLKQRTIKSIVKTVGIGLHSGRKVELTLRPAAPGTGIVFSRVDLPTPVDIPASAMSIGDT
CCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCCCHHHHCCHH
RLASVLQKDGARVSTVEHLMSACAGLGIDNLYVDVTAEEIPIMDGSAASFVFLIQSAGIE
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCHHHEEEEEECCCCC
EQNAPKRFIKVTKPVEIRDGDKFARLEPYFGFKLKFTIDFRHPAVDKTGQELEVDFANTS
CCCCCHHHEEECCCEEECCCCCEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCHH
YVREIARARTFGFAHEVEMMRELGLARGGSMDNAIVLDEYRILNNDGLRYDDEFVKHKML
HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEECEEEECCCCCCCCHHHHHHHHH
DAIGDLYVVGHPLLASYTAYKSGHGLNNALLRELLAHEDAYEIVTFDDPQAAPKGFAFDA
HHHCCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCEECC
QTAFA
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: UDP-3-O-(3-Hydroxytetradecanoyl)-N- Acetylglucosamine; H2O [C]

Specific reaction: UDP-3-O-(3-Hydroxytetradecanoyl)-N- Acetylglucosamine + H2O = UDP-3-O-(3-Hydroxytetradecanoyl)- Glucosamine + Acetate. [C]

General reaction: Hydrolase; Acting on carbon-nitrogen bonds, other than peptide bonds; In linear amides [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA