| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115350486
Identifier: 115350486
GI number: 115350486
Start: 483374
End: 485242
Strand: Direct
Name: 115350486
Synonym: Bamb_0432
Alternate gene names: NA
Gene position: 483374-485242 (Clockwise)
Preceding gene: 115350485
Following gene: 115350487
Centisome position: 13.59
GC content: 67.52
Gene sequence:
>1869_bases GTGGTATCTGCCGGCGCCTCTCTTCGTTTCCGCCGCCATATTCCGTCCGATTTCCGACCGATTGCCACGATGACCCAGCC GATCCGTTATTCGATTGCCCCGAAAGATCTTGCCGCGCACCTGTTCGAAGTGTCGGTGACGGTCACCGATCCCGATCCCG AAGGCCAGCGCTTCTCGCTGCCGGTATGGATTCCCGGCAGCTACCTCGTGCGCGAATTCGCGCGCAACATCGTGACGCTC GCCGCGTTCAACGACGCGGGCCGCAAGGTGCGGATCGCAAAAACCGACAAGAACACGTGGCAGGCCGCGCCGGTGAACGG CACGCTGACGCTGCGCTACGACGTGTACGCGTGGGATCTGTCGGTCCGCTCCGCGTATCTCGACGAATCGGGCGGCTTCT TCAACGCCACGGCCGTGTTCCTGAGCGTCGCCGGTCGCGAGGATGCACCGTGCGAAGTCGACATCGCGAAACCGGCGGGC GCGGCGTTCCGCACGTGGCGCGTCGGCACGTCGCTGCCCGAGGCGCGCGGCACCAGGCGTTACGGGTTCGGCGCATATCG GGCCGCGAACTATGACGAACTCACCGACCATCCGGTGACGATCGGCGAATTCGCGCTCGCGACGTTCGACGCGCACGGCG TGCCGCACGACATCGTGATCGCCGGGCGCGTGACGCAGCTCGACATGGAGCGGCTGCGCGCCGACCTGAAGCGCGTGTGC GAAGCGCAGATCGCGCTGTTCGAGCCGAAATCGAAGAAGGCGCCGATGGACCGCTACGTGTTCATGACGCTCGCGGTCAG CGACGGCTACGGCGGCCTCGAGCACCGTGCGTCGACCGCGCTGATCTGCAACCGCACCGATCTGCCGGTGAAGGGCCGGT CGGAAACGACGGAAGGCTATCGCACCTATCTCGGCCTGTGCAGCCACGAGTATTTCCACACGTGGAACGTGAAGCGCATC AAGCCGGCCGCGTTCGTGCCGTACGACCTCGCGCGGGAGAACTACACGTCGCTGCTGTGGCTGTTCGAGGGCTTCACGTC GTATTACGACGACCTGATGCTCGTGCGCAGCGGGCTGATGTCGCAGGACGACTATTTCGCGGCGCTCGGCCGTACCGTCG GCGGCGTGCTGCGCGGCACGGGGCGCCTGAAGCAAAGCGTCGCGGACAGCTCGTTCGACGCGTGGATCAAGTATTACCGC CAGGACGAGAACGCGACCAACGCGATCGTCAGCTATTACACGAAGGGTTCGCTCGTCGCGCTCGCGTTCGATCTCGCGAT CCGCGCACAGACGCGCGACCGCAAGTCGCTGGACGACGTGATGCGTCTGCTGTGGCAGCGCTACGGCCGTGAGTTCTATC GTGGCAAGCAGGCGGGCGTCGAGGAAAACGAGGTCGAGGCGCTGATCGAGGAAGCGACGGGCGTGGCCCTCGGCCGACTG TTCGCCGACGCCGTGCACGGCACGCGCGACCTGCCGCTCGCCGAACTGCTCGCGCCGTTCGGCGTGACGCTCGCGCCCGA GGTCGCGGCTGGCGCGGCCGCGAAACCGACGATCGGCGCGCGCCTGCGCGGCGGCGCGGACTGCACGCTGGCGGCGGTGT ACGAGGGCGGCGGCGCGCATCGCGCGGGGCTGTCGGCCGGCGACACGCTGATCGCGCTCGACGGGCTGCGCGTCACCGGC ACGAATCTCGACACGCTGCTCGCGCGCTACCGGCCGGGCGACAAGGTCGAGGTGCACGCATTCCGCCGCGACGAGCTGCG GACCGCGAAGCTGAAGCTGGACGGGCCTGAGATCATGCGCTACCGGCTTACAGCGGACGCGAAACCGGCCGCCGCACGCA AGTCCCGGGAAATCTGGCTCAAGGGCTGA
Upstream 100 bases:
>100_bases CCGGGCGCGGTGTCGGCCGATCAGCTGAACCAGGCGCTCGCGTCGAGCAAGTAACCGACCGGCACGCCGGGCCGCATGGC CCGGCCAGCGAGGGGCGCCC
Downstream 100 bases:
>100_bases TCCTGCACGAGCGGCTTTAGGGGCGCGACCATCGATTGTTCTGCTGGTGCAACAATCCGTCGCCCCTGAGCCGCTTTTTC ACGACGATGCGGCCACGCAC
Product: peptidase M61 domain-containing protein
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; Pdz/Dhr/Glgf; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Glycyl Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 622; Mature: 622
Protein sequence:
>622_residues MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTL AAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAG AAFRTWRVGTSLPEARGTRRYGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGYRTYLGLCSHEYFHTWNVKRI KPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYR QDENATNAIVSYYTKGSLVALAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAHRAGLSAGDTLIALDGLRVTG TNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMRYRLTADAKPAAARKSREIWLKG
Sequences:
>Translated_622_residues MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTL AAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAG AAFRTWRVGTSLPEARGTRRYGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGYRTYLGLCSHEYFHTWNVKRI KPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYR QDENATNAIVSYYTKGSLVALAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAHRAGLSAGDTLIALDGLRVTG TNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMRYRLTADAKPAAARKSREIWLKG >Mature_622_residues MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTL AAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAG AAFRTWRVGTSLPEARGTRRYGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGYRTYLGLCSHEYFHTWNVKRI KPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYR QDENATNAIVSYYTKGSLVALAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAHRAGLSAGDTLIALDGLRVTG TNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMRYRLTADAKPAAARKSREIWLKG
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68731; Mature: 68731
Theoretical pI: Translated: 8.88; Mature: 8.88
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSL CCCCCCCEEEHHCCCCCCCCHHHHCCCEEEECCHHHHHEEEEEEEEEEECCCCCCCEEEE PVWIPGSYLVREFARNIVTLAAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDL EEEECHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCEEECCCCCEEEEEEEEEEEEE SVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRTWRVGTSLPEARGTRR EHHHHHCCCCCCEEEHEEEEEEECCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC YGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC CCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGY HHHHEEECCCCCCCCCCEEEEEEEEEECCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHH RTYLGLCSHEYFHTWNVKRIKPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLM HHHHHHHCCCCEEECCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC SQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVA CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHEEECCCCEEE LAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL EEEEHHHCCCCCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAH HHHHHCCCCCCCHHHHHHHCCCEECCHHHCCCCCCCCCCCEECCCCCEEEEEEEECCCCC RAGLSAGDTLIALDGLRVTGTNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMR CCCCCCCCEEEEECCEEEECCCHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCHHHEE YRLTADAKPAAARKSREIWLKG EEECCCCCCHHHCCCCEEEECC >Mature Secondary Structure MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSL CCCCCCCEEEHHCCCCCCCCHHHHCCCEEEECCHHHHHEEEEEEEEEEECCCCCCCEEEE PVWIPGSYLVREFARNIVTLAAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDL EEEECHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCEEECCCCCEEEEEEEEEEEEE SVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRTWRVGTSLPEARGTRR EHHHHHCCCCCCEEEHEEEEEEECCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC YGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC CCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGY HHHHEEECCCCCCCCCCEEEEEEEEEECCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHH RTYLGLCSHEYFHTWNVKRIKPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLM HHHHHHHCCCCEEECCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC SQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVA CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHEEECCCCEEE LAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL EEEEHHHCCCCCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAH HHHHHCCCCCCCHHHHHHHCCCEECCHHHCCCCCCCCCCCEECCCCCEEEEEEEECCCCC RAGLSAGDTLIALDGLRVTGTNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMR CCCCCCCCEEEEECCEEEECCCHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCHHHEE YRLTADAKPAAARKSREIWLKG EEECCCCCCHHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA