Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350455

Identifier: 115350455

GI number: 115350455

Start: 451163

End: 452296

Strand: Direct

Name: 115350455

Synonym: Bamb_0401

Alternate gene names: NA

Gene position: 451163-452296 (Clockwise)

Preceding gene: 115350454

Following gene: 115350456

Centisome position: 12.69

GC content: 72.22

Gene sequence:

>1134_bases
GTGACCGATTTCCCCGTTTTCCACTGGACCGACGCCGACGGCGCCGAACATGCCGTGCGCTGGCGCTCCGAAGCCGGCGT
GCAGCCGCCGAAGCGCGCCGTGCCGGCCGATGACCGCCTCACCGCCGATGCCGCGTACCGCCTCGCATGCGAGGGCACCG
CGCTCGTCTGGCAGGGCGACTTCCAGAATGCGCGCCAGCTCGTGCAGGCGATGGCCCGCCGCGTCGAACGCAAGCCGAAG
AAGGCGAAGGCCGCGGCCGGCGCCGACGCATTCAACCTGCATCGGCTCGCGCAATCGCAGCGCGCCCGCACGCTCGGGAT
GCTGCTGATCCCGCTCGATGCCGACTACAGGATCCCGCTGCGCCGCGCGCCCGACGTGCGCGCCGCGTGCGAGGAAGCGT
ACGGGCCGGGCGGCGCGCCGTCGGTCGTGTCGCTGCGCGAACTGCTCGGTCTCGTCGGCGCGCACGAATGGCGCAAGAAG
GGCGTGCCGATTCCGGCGCTCGGCGGCGCGCCGATCCATCCGCATTACGGCGTGTTTTCGCCGGTGCGCGGCGAATACGT
CGAACTCGTCGCGCGCGCGCCGCTGCCGGCGACGTCGCTCGCGTTCGACATCGGCACCGGCACCGGCGTGCTCGCGGCCG
TGCTCGCATCGCGCGGCGTCGAGCGTATCGTCGCGACCGACCAGGATCCGCGCGCGCTTGCGTGTGCACGCGAGAACATC
GCGCGGCTCGGCCACGCCGATCGCGTCGACATCGTCGAAGCCGACCTGTTTCCGGCCGGCCGCGCGCCGCTCGTCGTGTG
CAACCCGCCGTGGGTGCCGGCCCGCCCGAGCGCGCCGATCGAATATGCGGTCTACGATCCCGACAGCCGCATGCTGCGCG
GTTTCCTCGCCGGGCTCGCCGACCATCTCGAACCGCGCGGCGAAGGCTGGCTGATCCTGTCCGATTTCGCCGAGCATCTC
GGCCTGCGGCCGCGTGAAACGTTGCTGCAATGGATCGATGAAGCCGGTCTCGTGGTGCTCGGCCGCGAAGACATCCGCCC
CGCGCATCCGAAGTCGACCGACGCGGACGATCCGCTGCACGCGGCACGCCGCGCCGAGCTCACGTCGCTCTGGCGGCTCG
GCGCGCGGGCCTGA

Upstream 100 bases:

>100_bases
CGCGGCCCCCGTTTTTGCGAGGCCGGACAAAGCGCGGTATGGTGTCGTCCGCGCGGTGAATTCTCGCCGCCTGTCTGAAG
CCAACCGTAGCCGAGCTCGC

Downstream 100 bases:

>100_bases
TCGCGCATTTTCGGTAAACTGTCGCCATTCCTCACGAATTCACGCCGCCGGGCCGTGGTCACCCGACCATGGCCCGGCGC
CGCTTCACGATGTCGAACAA

Product: methyltransferase small

Products: NA

Alternate protein names: Methyltransferase; Methylase Of Polypeptide Chain Release Factors; Methyltransferase Domain Protein; Adenine Specific DNA-Methyltransferase; Polypeptide Chain Release Factor Methylase; ElmF Protein; N5-Glutamine Methyltransferase; Methyltransferase SmallRibosomal; RNA Methyltransferase; Methylase Of Polypeptide Chain Release Factors Protein; Methyltransferase Small Domain-Containing Protein; 50S Ribosomal Methyltransferase PrmA Family Protein; Methylase

Number of amino acids: Translated: 377; Mature: 376

Protein sequence:

>377_residues
MTDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGDFQNARQLVQAMARRVERKPK
KAKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPLRRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKK
GVPIPALGGAPIHPHYGVFSPVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENI
ARLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLADHLEPRGEGWLILSDFAEHL
GLRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLHAARRAELTSLWRLGARA

Sequences:

>Translated_377_residues
MTDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGDFQNARQLVQAMARRVERKPK
KAKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPLRRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKK
GVPIPALGGAPIHPHYGVFSPVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENI
ARLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLADHLEPRGEGWLILSDFAEHL
GLRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLHAARRAELTSLWRLGARA
>Mature_376_residues
TDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGDFQNARQLVQAMARRVERKPKK
AKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPLRRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKKG
VPIPALGGAPIHPHYGVFSPVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENIA
RLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLADHLEPRGEGWLILSDFAEHLG
LRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLHAARRAELTSLWRLGARA

Specific function: Unknown

COG id: COG2890

COG function: function code J; Methylase of polypeptide chain release factors

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40940; Mature: 40809

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS00092 N6_MTASE ; PS00296 CHAPERONINS_CPN60

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGD
CCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEECCEEEEEECC
FQNARQLVQAMARRVERKPKKAKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPL
HHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCCC
RRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKKGVPIPALGGAPIHPHYGVFS
CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCC
PVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENI
CCCHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHH
ARLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLA
HHCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
DHLEPRGEGWLILSDFAEHLGLRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLH
HHCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHH
AARRAELTSLWRLGARA
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGD
CCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEECCEEEEEECC
FQNARQLVQAMARRVERKPKKAKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPL
HHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCCC
RRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKKGVPIPALGGAPIHPHYGVFS
CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCC
PVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENI
CCCHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHH
ARLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLA
HHCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
DHLEPRGEGWLILSDFAEHLGLRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLH
HHCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHH
AARRAELTSLWRLGARA
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA