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The map label for this gene is clpV1 [H]

Identifier: 115350441

GI number: 115350441

Start: 431997

End: 434666

Strand: Direct

Name: clpV1 [H]

Synonym: Bamb_0387

Alternate gene names: 115350441

Gene position: 431997-434666 (Clockwise)

Preceding gene: 115350440

Following gene: 115350442

Centisome position: 12.15

GC content: 68.73

Gene sequence:

>2670_bases
ATGAGCACGCCTCTGAAGACCCTGATCACGAAACTGAACCCGCTGTGCCGGCACGCGACCGAGCGTGCGGCGAGCGCGTG
CCTGGCGCGCGGCCATTACGAGGTCGATCTGGAGCACCTGTTCCTCGCGCTGCTCGACGAGGCGACGGGCGACCTGCCGC
TCGCACTGCGCGCGAGCCGCGTCGATCCGCATGCGCTGCGTGCCGATCTCGAGCGCGAACTCACGCGGCTGAAGACGGGC
AACACGCGCACGCCGGTTTTCTCCGTGCATCTGATCGCGCTGTTCGAGCAGGCATGGCTGATCGCGTCGCTCGATTCGCA
GCTCGGCCGCATCCGCTCGGGGCACCTGCTGCTCGCGCTGCTGACCGCGCCCGATCTCGCGCAGTTCGCGCAGCGCATGT
CGCCGCAGTTCGCGGAAATGAACGTGACGGACCTGAAGCACAAGTTCGACGAGATCATGGGCGGCTCGAGCGAGGCCGAG
CCGCGCCAGCTGGATACGGAAGAGGGTGACGTCGCGCCGGCCGCCAACGGCGCCTTGCCCGCGGCCGGCCCGTCGAAGAC
GCCCGCGCTCGACACGTACACGACCAACCTCACGCAGCGTGCGCGCGACGGCAAGATCGATCCGGTGATCGGTCGCGAAG
CCGAGATCCGCCAGGCGATCGACATCCTGATGCGCCGGCGCCAGAACAACCCGATCATGACCGGCGAGGCCGGCGTCGGC
AAAACGGCGGTCGTCGAGGGCCTCGCGTTGCGGATCGCGGCCGACGACGTGCCGCCGCCGCTGCGTGGCGTCGCGCTGCA
CGTGCTCGACATGGGCCTGCTGCAGGCCGGCGCGAGCGTGAAGGGCGAGTTCGAGAACCGTCTGAAGAGCGTGATCGACG
AGGTGAAGAAGAGCGCGCACCCGATCATCCTGTTCATCGACGAGGCGCACACGATCATCGGCGCGGGCGGCCAGGCCGGC
CAGAACGACGCGGCGAACCTGCTGAAGCCGGCGCTCGCGCGTGGCGAGCTGCGCACGATCGCCGCGACGACGTGGAGCGA
ATACAAGAAGTACTTCGAGAAGGATGCGGCGCTTGCGCGGCGTTTCCAGGTCGTGAAGGTCGAGGAGCCGAGCGAGCCGC
TCGCGGCCGCGATGCTGCGCGGGATGTCCGGGCTGATGGAGAAGCACTTCAACGTGCGGATCCTCGACGATGCGATCACC
GAGGCCGTGCGCCTGTCGCATCGCTACATCAGCGGCCGCCAGCTGCCGGACAAGGCGATCAGCGTGCTCGACACCGCGTG
CGCGAAGGTCGCGCTCGCGCACAGCGCGACGCCGGCGACGATCGACGACACGAAGAAGCGCATCGAGCGCATCGACGCGG
AAATCGCGTCGCTGGAGCGCGAATCGGCGGGCGGCGCGTCGCACGACGAGCGGCTGCTCGAACTGCGCGGCGCGCGCGAC
ACTGCGCTCGCGCAATTGGCCGAGGACGAGGCGCGCTATGAAGCCGAGCGCGTGATCGTCGCCGAGATCACCGAACTGCG
TGATGCGCTCGACAAGGCGCGCGGCCCGTCGGAAGACGGCGAGCCGGTCGACGTGTCGGCCACTCGCGAGAAGCTGACGG
AGCGCGTCGCGGCGCTGCACGCGCTGCAGGGCGGCGAGCCGATGGTGCCGCTGCAGGTCGACGGCCATGTCGTCGCCGAG
ATCGTCGCCGCGTGGACCGGCATTCCGCTCGGCCGTATGGTGAAGGACGAGATCGACACCGTGCTGAATCTGCAGCCGCT
GCTGAGTGCGCGCGTGATCGGCCAGGACCATGCGCTGGACGCGATCGCGCAGCGCGTGCGCACGGCGACCGCGAACCTCG
AGGATCCGAACAAGCCGCGCGGCGTGTTCATGTTCGTCGGGCCGTCGGGCGTGGGCAAGACCGAGACGGCGCTCGCGCTG
GCCGACATCCTGTACGGCGGCGAGCGCAAGATGGTCACGATCAACATGAGCGAGTACCAGGAAGCGCACAGCGTGTCGGG
CCTGAAGGGTTCGCCGCCGGGCTACGTCGGCTACGGCGAAGGCGGCGTGCTGACCGAGGCCGTGCGCCGCAACCCGTATT
CCGTCGTGCTGCTCGATGAAGTCGAGAAGGCGCACCCGGACGTGCTCGAGATGTTCTTCCAGGTGTTCGACAAGGGCACG
ATGGACGACGCCGAAGGGCGCGAGATCGACTTCCGCAACACGCTGATCATCCTGACGTCGAACGTCGGGTCGGCCGCGGT
GATGCAGGCGTGCCTGAACAAGCCGGCCGAGGAGCTGCCCGATCCGGACGCGCTCGCCGAGGCGCTGCGCCCGCAGCTGT
ACAAGACGTTCAAGCCCGCGTTCCTCGGCCGGATGAAGGTCGTGCCGTACTACCCGATTTCCGACGACGTGCTGGCCGAG
ATCATCGAGCTGAAGCTCGAACGGATCCGCCGCCGCATCGACGCGAACCACAAGGCCGCGTTCGAGTGGGACGAATCGCT
CGTCGATGCGGTGCTCGCGCGCTGCACCGAGGTCGACTCGGGCGCCCGCAACGTCGACCACATCCTGAACGGCACGTTGC
TGCCGGAGATCGCGGGCCACGTGCTCGGCCGGATCGCCGACGGCGCGGCCATCGCGCGCATCGCGGTGCGCGCGGACGAG
GCCGGCGAATTCGCTTACACCGTCGAATGA

Upstream 100 bases:

>100_bases
CGCGACGCGCTCGACGACCGCTCGGACGCCCGCTACGAACTGCACGTGATTCACTGATTCCAAACGACAATAAACACCAA
TCGAACCTGAGATCGACGCC

Downstream 100 bases:

>100_bases
GCACCGCCGCGCAACACGCATTGATGAACTGACCGAACCATGCCGATCAATCTTCCCGAGTTGCTGACGCCGATCAGCGA
TGCGTCGCCCAGCGGCGACG

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 889; Mature: 888

Protein sequence:

>889_residues
MSTPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASRVDPHALRADLERELTRLKTG
NTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLALLTAPDLAQFAQRMSPQFAEMNVTDLKHKFDEIMGGSSEAE
PRQLDTEEGDVAPAANGALPAAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSATPATIDDTKKRIERIDAEIASLERESAGGASHDERLLELRGARD
TALAQLAEDEARYEAERVIVAEITELRDALDKARGPSEDGEPVDVSATREKLTERVAALHALQGGEPMVPLQVDGHVVAE
IVAAWTGIPLGRMVKDEIDTVLNLQPLLSARVIGQDHALDAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALAL
ADILYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGT
MDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDALAEALRPQLYKTFKPAFLGRMKVVPYYPISDDVLAE
IIELKLERIRRRIDANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADE
AGEFAYTVE

Sequences:

>Translated_889_residues
MSTPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASRVDPHALRADLERELTRLKTG
NTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLALLTAPDLAQFAQRMSPQFAEMNVTDLKHKFDEIMGGSSEAE
PRQLDTEEGDVAPAANGALPAAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVG
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAG
QNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAIT
EAVRLSHRYISGRQLPDKAISVLDTACAKVALAHSATPATIDDTKKRIERIDAEIASLERESAGGASHDERLLELRGARD
TALAQLAEDEARYEAERVIVAEITELRDALDKARGPSEDGEPVDVSATREKLTERVAALHALQGGEPMVPLQVDGHVVAE
IVAAWTGIPLGRMVKDEIDTVLNLQPLLSARVIGQDHALDAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALAL
ADILYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGT
MDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDALAEALRPQLYKTFKPAFLGRMKVVPYYPISDDVLAE
IIELKLERIRRRIDANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADE
AGEFAYTVE
>Mature_888_residues
STPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASRVDPHALRADLERELTRLKTGN
TRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLALLTAPDLAQFAQRMSPQFAEMNVTDLKHKFDEIMGGSSEAEP
RQLDTEEGDVAPAANGALPAAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVGK
TAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAHPIILFIDEAHTIIGAGGQAGQ
NDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALARRFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAITE
AVRLSHRYISGRQLPDKAISVLDTACAKVALAHSATPATIDDTKKRIERIDAEIASLERESAGGASHDERLLELRGARDT
ALAQLAEDEARYEAERVIVAEITELRDALDKARGPSEDGEPVDVSATREKLTERVAALHALQGGEPMVPLQVDGHVVAEI
VAAWTGIPLGRMVKDEIDTVLNLQPLLSARVIGQDHALDAIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALALA
DILYGGERKMVTINMSEYQEAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGTM
DDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDALAEALRPQLYKTFKPAFLGRMKVVPYYPISDDVLAEI
IELKLERIRRRIDANHKAAFEWDESLVDAVLARCTEVDSGARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADEA
GEFAYTVE

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=317, Percent_Identity=33.4384858044164, Blast_Score=172, Evalue=2e-42,
Organism=Escherichia coli, GI1788943, Length=825, Percent_Identity=39.5151515151515, Blast_Score=521, Evalue=1e-148,
Organism=Escherichia coli, GI1787109, Length=472, Percent_Identity=35.8050847457627, Blast_Score=244, Evalue=1e-65,
Organism=Saccharomyces cerevisiae, GI6320464, Length=719, Percent_Identity=39.4993045897079, Blast_Score=464, Evalue=1e-131,
Organism=Saccharomyces cerevisiae, GI6323002, Length=771, Percent_Identity=35.1491569390402, Blast_Score=454, Evalue=1e-128,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 96546; Mature: 96415

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: PS00870 CLPAB_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASR
CCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCEEEEECC
VDPHALRADLERELTRLKTGNTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLAL
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LTAPDLAQFAQRMSPQFAEMNVTDLKHKFDEIMGGSSEAEPRQLDTEEGDVAPAANGALP
ECCCCHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVG
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAH
HHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
PIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALAR
CEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAITEAVRLSHRYISGRQLPDKAI
HEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHH
SVLDTACAKVALAHSATPATIDDTKKRIERIDAEIASLERESAGGASHDERLLELRGARD
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCH
TALAQLAEDEARYEAERVIVAEITELRDALDKARGPSEDGEPVDVSATREKLTERVAALH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ALQGGEPMVPLQVDGHVVAEIVAAWTGIPLGRMVKDEIDTVLNLQPLLSARVIGQDHALD
HHCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALALADILYGGERKMVTINMSEYQ
HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHH
EAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGT
HHHHCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC
MDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDALAEALRPQLYKTFKPA
CCCCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHH
FLGRMKVVPYYPISDDVLAEIIELKLERIRRRIDANHKAAFEWDESLVDAVLARCTEVDS
HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
GARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADEAGEFAYTVE
CCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHEEECCCCCCEEEEEC
>Mature Secondary Structure 
STPLKTLITKLNPLCRHATERAASACLARGHYEVDLEHLFLALLDEATGDLPLALRASR
CCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHCCCCCCEEEEECC
VDPHALRADLERELTRLKTGNTRTPVFSVHLIALFEQAWLIASLDSQLGRIRSGHLLLAL
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LTAPDLAQFAQRMSPQFAEMNVTDLKHKFDEIMGGSSEAEPRQLDTEEGDVAPAANGALP
ECCCCHHHHHHHCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
AAGPSKTPALDTYTTNLTQRARDGKIDPVIGREAEIRQAIDILMRRRQNNPIMTGEAGVG
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCC
KTAVVEGLALRIAADDVPPPLRGVALHVLDMGLLQAGASVKGEFENRLKSVIDEVKKSAH
HHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
PIILFIDEAHTIIGAGGQAGQNDAANLLKPALARGELRTIAATTWSEYKKYFEKDAALAR
CEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
RFQVVKVEEPSEPLAAAMLRGMSGLMEKHFNVRILDDAITEAVRLSHRYISGRQLPDKAI
HEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHH
SVLDTACAKVALAHSATPATIDDTKKRIERIDAEIASLERESAGGASHDERLLELRGARD
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCH
TALAQLAEDEARYEAERVIVAEITELRDALDKARGPSEDGEPVDVSATREKLTERVAALH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ALQGGEPMVPLQVDGHVVAEIVAAWTGIPLGRMVKDEIDTVLNLQPLLSARVIGQDHALD
HHCCCCCEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
AIAQRVRTATANLEDPNKPRGVFMFVGPSGVGKTETALALADILYGGERKMVTINMSEYQ
HHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHH
EAHSVSGLKGSPPGYVGYGEGGVLTEAVRRNPYSVVLLDEVEKAHPDVLEMFFQVFDKGT
HHHHCCCCCCCCCCEEECCCCCHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHHHCCCC
MDDAEGREIDFRNTLIILTSNVGSAAVMQACLNKPAEELPDPDALAEALRPQLYKTFKPA
CCCCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHH
FLGRMKVVPYYPISDDVLAEIIELKLERIRRRIDANHKAAFEWDESLVDAVLARCTEVDS
HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
GARNVDHILNGTLLPEIAGHVLGRIADGAAIARIAVRADEAGEFAYTVE
CCHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHEEECCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]