Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350436

Identifier: 115350436

GI number: 115350436

Start: 426364

End: 427854

Strand: Direct

Name: 115350436

Synonym: Bamb_0382

Alternate gene names: NA

Gene position: 426364-427854 (Clockwise)

Preceding gene: 115350435

Following gene: 115350437

Centisome position: 11.99

GC content: 62.91

Gene sequence:

>1491_bases
ATGAACCAGCAAACGGCTGCGGCCCAAGCGAGCGGCGCGGAATACGCCGCCGGGACTTCGTTGCTCGACGATATCGTCGA
GAAGAGCAAGGTCGCGAAATCCGATTCCGAGCATGCGCGTGCGAAGGACCTGATCGGCGAACTCGTGCACCAGGTGCTCG
ACGGCACGGTGATCGTGTCGGACAACCTGTCGGCGACGATCGACGCGCGCGTCGCGGAGCTCGACCGCCTGATCTCCACG
CAGCTCTCCGCGGTGATGCACGCGCCGGAATTCCAGCGCCTGGAAAGCACGTGGCGCGGGATGGACTACCTGGTCAAGGA
AAGCAACACGGGCCAGACGATCAAGATCAAGGCGCTGCACGCCCCGAAGCGCGACCTCGTGCGCGACTTCAAGGGCGCGA
GCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAAGAAGAGTTCGGCACGTTCGGCGGCTCGCCGTTCGGCGCG
CTGATCGGCGACTACGAGATCTCGCGCCAGCCGGAAGACATGTACTTCATCGAGCAGATGTCGCACGTCGCGGCCGCCGC
GCATGCGCCGTTCATCGCGTCGGCGTCGCCGGAGCTGCTCGGCCTCGAGTCGTTCTCCGACCTCGGCAAGCCGCGCGATC
TCGGCAAGGTGTTCGACACGGTCGAATACGCGAAGTGGAAGTCGTTCCGCGATTCCGAGGATTCGCGCTACGTCGGCCTC
ACGCTGCCGCGCTTCCTCGGCCGCCTGCCGTTCAATCCGAAGGACGGCCAGACCGCGGAGAACTTCAACTTCGTCGAGGA
TGTGGACGGCACCGAGCACGACAAGTACCTGTGGTGCAACGCGGCGTGGGCATTCGCGGCACGCCTGACCGCCGCGTTCG
ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTCGAAGGCGGTGGCCTCGTCGAGGATCTGCCGACCCACACGTTCAAG
ACCGACGACGGTGAAGTCGCGCTGAAGTGCCCGACCGAAATCGCGATCACCGATCGCCGCGAGAAGGAGCTGAGCGACCT
CGGCTTCATCCCGCTCGTTCATTGCAAGAACTCGGATTACGCTGCGTTCTTCGCCGCGCAATCGGTGCAGAAACCGAAAA
AATACAGCACCGACAGCGCGAATGCGAATGCCGTCCTGTCCGCCCAGCTTCAGTACATCTTCTCGGTATCGCGCGTCGCG
CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCATCGGCGCAGAACGTGGAGACTTTCCTCAACCGGTG
GATTTCGCAGTACGTCCTGCTCGACGACAACGCATCGCAGGAACAGAAGGCGCAATTCCCGCTGCGCGAGGCATCCATAC
AAGTGTCAGAGATTCCGGGGAAGCCGGGCTCGTATCGTTCGGTCGCGTTCCTGCGCCCGCACTTTCAGCTCGACGAACTC
TCGATTTCTCTGCGACTTGTCGCTGATCTGCCCAAACCGGCAAATTCATAA

Upstream 100 bases:

>100_bases
GGATCTGCTGTCGGAAGTGCTGAAGAACACGCAGCAGCTGCAGGAGCTCGCGAAGGGCACGGGCGGCGACAAAGACGGCG
AATGACGACGGAGTATTGAG

Downstream 100 bases:

>100_bases
GCGAGCAAATCGCCCGGGCGGGCCGCCTGGGTAGGACGTTAAAACCACCTCTTTGGGGAGTCGAAGGGCCATGTTACATA
TGCACTTGCAGTTTGGTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST
QLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA
HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKPANS

Sequences:

>Translated_496_residues
MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST
QLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA
HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKPANS
>Mature_496_residues
MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST
QLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA
LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK
TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA
HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL
SISLRLVADLPKPANS

Specific function: Unknown

COG id: COG3517

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54871; Mature: 54871

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVS
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEE
DNLSATIDARVAELDRLISTQLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALH
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEEECCCCCCEEEEEEEC
APKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGALIGDYEISRQPEDMYFIEQM
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH
SHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
HHHHHHHCCCEECCCCCCCEECHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCA
EHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHH
AIRGVEGGGLVEDLPTHTFKTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDY
HHCCCCCCCCHHHCCCCCEECCCCCEEEECCCEEEECCCHHHHHHHCCCEEEEEECCCCC
AAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVAHYLKAMMRDKIGSFASAQNV
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
ETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL
HHHHHHHHHHEEEECCCCCHHHHHCCCHHHHCEEEEECCCCCCCCCEEEEECCCCEEHHH
SISLRLVADLPKPANS
EEEEEEEECCCCCCCC
>Mature Secondary Structure
MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVS
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEE
DNLSATIDARVAELDRLISTQLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALH
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEEECCCCCCEEEEEEEC
APKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGALIGDYEISRQPEDMYFIEQM
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH
SHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL
HHHHHHHCCCEECCCCCCCEECHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCA
EHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHH
AIRGVEGGGLVEDLPTHTFKTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDY
HHCCCCCCCCHHHCCCCCEECCCCCEEEECCCEEEECCCHHHHHHHCCCEEEEEECCCCC
AAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVAHYLKAMMRDKIGSFASAQNV
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
ETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL
HHHHHHHHHHEEEECCCCCHHHHHCCCHHHHCEEEEECCCCCCCCCEEEEECCCCEEHHH
SISLRLVADLPKPANS
EEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA