Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115350426

Identifier: 115350426

GI number: 115350426

Start: 418105

End: 418500

Strand: Direct

Name: 115350426

Synonym: Bamb_0372

Alternate gene names: NA

Gene position: 418105-418500 (Clockwise)

Preceding gene: 115350425

Following gene: 115350427

Centisome position: 11.76

GC content: 45.96

Gene sequence:

>396_bases
ATGAATACGACAACGAAAGTGATGAATCCCCAGGCGATCACTTCAATTTATGGAGAATTTCCTTCTCTTATCGGAGCAGA
GCTAACCGAGGTTCGTGTCGCTCGAGACGAGCCAAGGATATCGGTTAGGTTTGCAACGGAACGAAGACCGATAAAGCACC
CTGCGCGGTGGCCGCAAAATTACGATGAGATTTATATCGGAATTTCGTTTGTTGGGGTGTGCGATTTTTCGTTTTTCCAA
TGGGGGCAAAAAAATATCGTGGAAGAGGTTGATTTAAAGGATATTGATGATCGGGTGTCCGTTCGGTTTTCTTGCAAGAA
CCAAGTTGCGTTGAAATTCTCATGCGATTGGATTCGTATTGAGGGCGTTGCCTGGGGGTATGTCGGGAGCCATTAA

Upstream 100 bases:

>100_bases
TGAATCGATACAGCCGCGTGCAGTTCTTCTTCGATCCGGTCGGCAATCTGGTGCGCGAATATATGGATGATCATTACTGC
TGCAACTATCAAAACAGGAA

Downstream 100 bases:

>100_bases
TTGATAAATCAATCGATTTCGGTCACATATTTGAGGTGGCTCAAGTGTTGATTTGGCGAATGATATGGGGTGGCGAATAT
GTATACCGAAGTGATCTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MNTTTKVMNPQAITSIYGEFPSLIGAELTEVRVARDEPRISVRFATERRPIKHPARWPQNYDEIYIGISFVGVCDFSFFQ
WGQKNIVEEVDLKDIDDRVSVRFSCKNQVALKFSCDWIRIEGVAWGYVGSH

Sequences:

>Translated_131_residues
MNTTTKVMNPQAITSIYGEFPSLIGAELTEVRVARDEPRISVRFATERRPIKHPARWPQNYDEIYIGISFVGVCDFSFFQ
WGQKNIVEEVDLKDIDDRVSVRFSCKNQVALKFSCDWIRIEGVAWGYVGSH
>Mature_131_residues
MNTTTKVMNPQAITSIYGEFPSLIGAELTEVRVARDEPRISVRFATERRPIKHPARWPQNYDEIYIGISFVGVCDFSFFQ
WGQKNIVEEVDLKDIDDRVSVRFSCKNQVALKFSCDWIRIEGVAWGYVGSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15090; Mature: 15090

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTTKVMNPQAITSIYGEFPSLIGAELTEVRVARDEPRISVRFATERRPIKHPARWPQN
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
YDEIYIGISFVGVCDFSFFQWGQKNIVEEVDLKDIDDRVSVRFSCKNQVALKFSCDWIRI
CCEEEEEEEEEEEECCHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCEEEE
EGVAWGYVGSH
CCEEECCCCCC
>Mature Secondary Structure
MNTTTKVMNPQAITSIYGEFPSLIGAELTEVRVARDEPRISVRFATERRPIKHPARWPQN
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHEEEEECCCCCEEEEEECCCCCCCCCCCCCCC
YDEIYIGISFVGVCDFSFFQWGQKNIVEEVDLKDIDDRVSVRFSCKNQVALKFSCDWIRI
CCEEEEEEEEEEEECCHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCCEEEEEECCEEEE
EGVAWGYVGSH
CCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA