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The map label for this gene is rpl4lp

Identifier: 11499508

GI number: 11499508

Start: 1723732

End: 1724490

Strand: Reverse

Name: rpl4lp

Synonym: AF1924

Alternate gene names: 11499508

Gene position: 1724490-1723732 (Counterclockwise)

Preceding gene: 11499509

Following gene: 11499507

Centisome position: 79.16

GC content: 52.83

Gene sequence:

>759_bases
ATGAAGGCCAAGGTTTTGAACCTGAAGGGAGAGGTAACAGAGGAAATAGAGCTTCCCGAAGTGTTTGCAGAGGAGTTCAG
ACCTGACATCATCAAGAGGGCTGTTCTGGCCCTTCAGTCTCATCGCAGGCAGCCATACGGCCCGAATCCGCTGAGCGGTG
TTGACTACTCGTGGGAGAACTGGGGACCGGGGCATGGATATGCGAGAGTTCCGAGGTGGAAGCTGGGCAGAAGGGCTGTT
GTCGTTCCTCAGGCTGTCGGTGGGAGAAGGGCACATCCGCCAAAGCCGGAGAGAAAGTGGGCGGAGAAGATAAACAAGAA
GGAAATGAGAAAGGCTTTGAAGTCAGCGATTGCAGCTACTGCAAATGAGGAGCTTGTGAGGCAGAGAAGCCACGTTTTCG
AGGGAGAGCTGCCGAAGGTTGTGAGCAATGAACTGGAGTCGGTGAAGAGAACAAAGGACGTTGCGGAGGTTTTCAGGGCA
ATTGGCGTTTACGCTGATGTGGAGAGGGCGAAGGAGAGGAAGAGATACAGGGCCGGCAGAGGGAAGATGAGAGGAAGGAG
ATACGTCAAAAAGAAGAGCGTTCTGCTTGTTGTAGGGAAGGATGATGGAGTTGTGAAGGCTGCAAAGAATCTTCCGGGAG
TGGATGCGGTGGTTGTTAAGGATTTGAATGTAGAGCTTCTCGCTCCCGGCTGTCATCCAGGAAGGCTTACTGTGTGGACA
AAATCGGCAGTTGAGTATCTGGGTGAGTGGTTATGCTGA

Upstream 100 bases:

>100_bases
GGCTGATAAGGATGAGGGATGCGATAAGACCACCGAAGGCGCATTTTGATGGTGTGAATATTGTTTACGTTAGCACAACG
TCCAAGCAGGGGAGATGATT

Downstream 100 bases:

>100_bases
TTAAATGCTTCCTCGTTACGGAGAAGAGTGTTGCAGAGCTGGAAAAGAACGTGCTGACGGCGATAGTTGACATGAGGGCC
AGAAAGGAGCACATCAAAAA

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MKAKVLNLKGEVTEEIELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGRRAV
VVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEGELPKVVSNELESVKRTKDVAEVFRA
IGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWT
KSAVEYLGEWLC

Sequences:

>Translated_252_residues
MKAKVLNLKGEVTEEIELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGRRAV
VVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEGELPKVVSNELESVKRTKDVAEVFRA
IGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWT
KSAVEYLGEWLC
>Mature_252_residues
MKAKVLNLKGEVTEEIELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLGRRAV
VVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFEGELPKVVSNELESVKRTKDVAEVFRA
IGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWT
KSAVEYLGEWLC

Specific function: Forms part of the polypeptide exit tunnel

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family

Homologues:

Organism=Homo sapiens, GI16579885, Length=253, Percent_Identity=35.9683794466403, Blast_Score=139, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI17508669, Length=251, Percent_Identity=36.6533864541833, Blast_Score=155, Evalue=3e-38,
Organism=Saccharomyces cerevisiae, GI6319505, Length=256, Percent_Identity=39.0625, Blast_Score=156, Evalue=4e-39,
Organism=Saccharomyces cerevisiae, GI6320215, Length=253, Percent_Identity=39.5256916996047, Blast_Score=155, Evalue=4e-39,
Organism=Drosophila melanogaster, GI24650747, Length=245, Percent_Identity=37.9591836734694, Blast_Score=160, Evalue=9e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL4_ARCFU (O28355)

Other databases:

- EMBL:   AE000782
- PIR:   C69490
- RefSeq:   NP_070749.1
- ProteinModelPortal:   O28355
- SMR:   O28355
- GeneID:   1485147
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF1924
- NMPDR:   fig|224325.1.peg.1910
- TIGR:   AF_1924
- HOGENOM:   HBG316531
- OMA:   KMRGRRY
- ProtClustDB:   PRK04042
- BioCyc:   AFUL224325:AF_1924-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01328_A
- InterPro:   IPR002136
- InterPro:   IPR013000
- InterPro:   IPR019970
- TIGRFAMs:   TIGR03672

Pfam domain/function: PF00573 Ribosomal_L4; SSF52166 Ribosomal_L4/L1E

EC number: NA

Molecular weight: Translated: 28412; Mature: 28412

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKVLNLKGEVTEEIELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWEN
CCCEEECCCCCCHHHCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
WGPGHGYARVPRWKLGRRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAAT
CCCCCCCCCCCCHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHC
ANEELVRQRSHVFEGELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGR
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWT
CHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCEEEECCCCCCCEEEEEH
KSAVEYLGEWLC
HHHHHHHHHHCC
>Mature Secondary Structure
MKAKVLNLKGEVTEEIELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWEN
CCCEEECCCCCCHHHCCCHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
WGPGHGYARVPRWKLGRRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAAT
CCCCCCCCCCCCHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHC
ANEELVRQRSHVFEGELPKVVSNELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGR
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GKMRGRRYVKKKSVLLVVGKDDGVVKAAKNLPGVDAVVVKDLNVELLAPGCHPGRLTVWT
CHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCEEEEECCCEEEECCCCCCCEEEEEH
KSAVEYLGEWLC
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475