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The map label for this gene is rpl23P

Identifier: 11499507

GI number: 11499507

Start: 1723493

End: 1723744

Strand: Reverse

Name: rpl23P

Synonym: AF1923

Alternate gene names: 11499507

Gene position: 1723744-1723493 (Counterclockwise)

Preceding gene: 11499508

Following gene: 11499506

Centisome position: 79.13

GC content: 47.62

Gene sequence:

>252_bases
GTGGTTATGCTGATTAAATGCTTCCTCGTTACGGAGAAGAGTGTTGCAGAGCTGGAAAAGAACGTGCTGACGGCGATAGT
TGACATGAGGGCCAGAAAGGAGCACATCAAAAAGGAGATTGAAAAGCTCTTCAACGTTGAGGTGGAGAGGGTCAACACGC
TGATAACGCCGAAAGGCGAGAAGAAAGCCTACATCAAGCTCAAGCCCGATTACTCGGCTGAAGAGATTCTTTCAAAGCTT
GGAGTGTTCTGA

Upstream 100 bases:

>100_bases
CGGTGGTTGTTAAGGATTTGAATGTAGAGCTTCTCGCTCCCGGCTGTCATCCAGGAAGGCTTACTGTGTGGACAAAATCG
GCAGTTGAGTATCTGGGTGA

Downstream 100 bases:

>100_bases
GGTGGTGATGTATGGGTAAAAGAATAATCTCCCAGAATAGAGGAAAAGGAACCCCAACATACAGGGCTCCATCTCACAGG
TATAAGACAGACGCAAAGCT

Product: 50S ribosomal protein L23P (rpl23P)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MVMLIKCFLVTEKSVAELEKNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKKAYIKLKPDYSAEEILSKL
GVF

Sequences:

>Translated_83_residues
MVMLIKCFLVTEKSVAELEKNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKKAYIKLKPDYSAEEILSKL
GVF
>Mature_83_residues
MVMLIKCFLVTEKSVAELEKNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGEKKAYIKLKPDYSAEEILSKL
GVF

Specific function: Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

Organism=Homo sapiens, GI17105394, Length=80, Percent_Identity=46.25, Blast_Score=79, Evalue=1e-15,
Organism=Homo sapiens, GI310129763, Length=79, Percent_Identity=43.0379746835443, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17508675, Length=79, Percent_Identity=45.5696202531646, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17569427, Length=80, Percent_Identity=43.75, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324445, Length=63, Percent_Identity=44.4444444444444, Blast_Score=61, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24655502, Length=81, Percent_Identity=39.5061728395062, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_ARCFU (O28356)

Other databases:

- EMBL:   AE000782
- PIR:   B69490
- RefSeq:   NP_070748.1
- ProteinModelPortal:   O28356
- SMR:   O28356
- GeneID:   1485146
- GenomeReviews:   AE000782_GR
- KEGG:   afu:AF1923
- NMPDR:   fig|224325.1.peg.1909
- TIGR:   AF_1923
- HOGENOM:   HBG439330
- OMA:   RGEKKAY
- ProtClustDB:   CLSK2747092
- BioCyc:   AFUL224325:AF_1923-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_A
- InterPro:   IPR012677
- InterPro:   IPR019985
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330
- TIGRFAMs:   TIGR03636

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 9580; Mature: 9580

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMLIKCFLVTEKSVAELEKNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGE
CEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
KKAYIKLKPDYSAEEILSKLGVF
CEEEEEECCCCCHHHHHHHHCCC
>Mature Secondary Structure
MVMLIKCFLVTEKSVAELEKNVLTAIVDMRARKEHIKKEIEKLFNVEVERVNTLITPKGE
CEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCC
KKAYIKLKPDYSAEEILSKLGVF
CEEEEEECCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475