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The map label for this gene is nifU-3

Identifier: 11498240

GI number: 11498240

Start: 567691

End: 567924

Strand: Reverse

Name: nifU-3

Synonym: AF0632

Alternate gene names: 11498240

Gene position: 567924-567691 (Counterclockwise)

Preceding gene: 11498241

Following gene: 11498239

Centisome position: 26.07

GC content: 49.15

Gene sequence:

>234_bases
ATGTCGTTAAGAGAGAAAGTTGAAGAAGTTGTTGAAAAAGACATAAGACCGGCCTTGATGAGGGATGGGGGAAACATAGC
GGTCGTCGACGTTGATGAAGGTTCTGGAACCGTCAAAGTTCAGCTTCTTGGCGCATGCGGTGGTTGCCCGATGTCGATGA
TTACACTGACCTCCTTCGTCGAGAGATACCTCAGAGCCAAGGTTCCTGAAGTAAAGAAGGTCGTGCCAGTCTGA

Upstream 100 bases:

>100_bases
TAAAAAGGCTGAGGGGTTAGAAATCCCTCCAATTTTTGTTTGTGTACTCCTCCTCTTTCAAACCAAAAAGCTTATTATTT
CCGTCAAGGGAAGAGATTTT

Downstream 100 bases:

>100_bases
TTATGATAAAGCTGGTAGAGCCTCTTAAAAAGCTCATAATAGACGGAGTCGGAGTTAGTGGAGAAGAAGTGGAAGAGCAG
CTTTTCGGTGGATTTTGCGA

Product: nifU protein (nifU-3)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MSLREKVEEVVEKDIRPALMRDGGNIAVVDVDEGSGTVKVQLLGACGGCPMSMITLTSFVERYLRAKVPEVKKVVPV

Sequences:

>Translated_77_residues
MSLREKVEEVVEKDIRPALMRDGGNIAVVDVDEGSGTVKVQLLGACGGCPMSMITLTSFVERYLRAKVPEVKKVVPV
>Mature_76_residues
SLREKVEEVVEKDIRPALMRDGGNIAVVDVDEGSGTVKVQLLGACGGCPMSMITLTSFVERYLRAKVPEVKKVVPV

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins [H]

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17541876, Length=71, Percent_Identity=43.6619718309859, Blast_Score=62, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322811, Length=75, Percent_Identity=40, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001075
- ProDom:   PD002830 [H]

Pfam domain/function: PF01106 NifU [H]

EC number: NA

Molecular weight: Translated: 8346; Mature: 8215

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLREKVEEVVEKDIRPALMRDGGNIAVVDVDEGSGTVKVQLLGACGGCPMSMITLTSFV
CCHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHH
ERYLRAKVPEVKKVVPV
HHHHHCCCCCCHHCCCC
>Mature Secondary Structure 
SLREKVEEVVEKDIRPALMRDGGNIAVVDVDEGSGTVKVQLLGACGGCPMSMITLTSFV
CHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHH
ERYLRAKVPEVKKVVPV
HHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]