Click here to switch to the map view.

The map label for this gene is traB

Identifier: 11497943

GI number: 11497943

Start: 302206

End: 303396

Strand: Reverse

Name: traB

Synonym: AF0331

Alternate gene names: NA

Gene position: 303396-302206 (Counterclockwise)

Preceding gene: 11497944

Following gene: 11497942

Centisome position: 13.93

GC content: 51.13

Gene sequence:

>1191_bases
TTGGAGGAAAAGAGGCTCGTCATAGTAGGCACAGCACACGTTTCCAAGAGAAGCGTTGAAGAGGTCGCGGAGGTTATTGA
AAGGGAAAAGCCCGATGCGGTTGCGGTTGAGCTCTGTCCGAGAAGGTATCACGCCCTCGTCCACGGGCAGAGGGAGGAGA
TTTCGGTAGCTGATGTGATAAGGAAGGGCAACGTTTTCATGCTCCTCTTTCAGCTCATTCTTGCATACTTTCAGAGGAAG
GTTGGAGAGGAGACTGGAGTGAAGCCGGGCAGCGAGATGCTTGCAGCAATTGAGAAGGCAAGGGAAGCAGGAGCAGATGT
GCTGCTCATAGACAGAGATATTGGCCTTACCTTCACGCGCTTCTGGCAGAAGCTGACGTTCGTGGAGAAAATAAAGCTCA
TTTTTCACCTCGTAAGAAGCACCTTCAGCGGGGATGAGATAGAGGTCGATGAGATGCTTGAAGAGGACGTTCTTGACATG
CTGGTAAAGGAGTTCAGAAAGATATCCCCCAACGCTGCAAAAGTTCTGATCGACGAGAGGGATGTTTACATGGCCGCCAA
CCTGCTCAACGCTCTGTCCAGATACAACAGAATTGTAGCCGTTGTTGGTGCTGGCCACAGGAAGGGGATCGAGGAGGCTC
TGCTGAAACTCAAGGAAAATCCCGTAAATTTGAGGGAGCTTGAGGAGGTGAAGAAGGGTAGAAGCTACTTCAAAATTTTC
ATGGGGGCCTTTACTGCCCTGATTGTTGGAACCTTTATCCTCATAGCCACGTCGCTCAACACGGAAGTTCTAGTTCAGGC
GTTTCTTTACTGGTTCTTAATTAACGGAGTGCTCTCTGCAGTAGGCGCTTCGCTGGCGAGGGGGCATCCTTTGTCCATAG
TAACGGCATTTCTGTGCGCCTGGATGACTTCCCTTAATCCGCTTGTTGCTGCCGGCTGGGTTTCGGGCCTAGTGGAAGCA
TGGATTAGGAAACCGACGGTTGAGGATTTCTCAAAGCTCGTTGAGGCGGAAAGCCTTAGGGAGATGATGCAGAACAAGTT
CTTCCGCGTGCTCCTCGTTGCCGCTTTAACGAATGTCGGGAGCATGATAGGAACAATTTACGGCGGGTGGTACATCATCT
CCACCTTCGGTGTGGACGTTGCAAAGGTTGTGGGGGAGAGGGTTGTTGAGGTAATAGGAGGGCTCCTATGA

Upstream 100 bases:

>100_bases
GGAGGCTGCCGGTGGTTGAGCACGGCAGAGTTGTCGGAATCGTGTCAAGGAGCGACTTAATGAGAATCAAGGAGATTCTT
GAGGCTCTGGAGGTGATGGG

Downstream 100 bases:

>100_bases
AGATATACATCCAGCCTCTTTCGGTGAACAGCCACACGGTTGAGGTACTCGCAAACTCCCTCCCGAAAATTTTCAACGCC
GAGGTTTTTGTGCTTCCGGC

Product: pheromone shutdown protein (traB)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MEEKRLVIVGTAHVSKRSVEEVAEVIEREKPDAVAVELCPRRYHALVHGQREEISVADVIRKGNVFMLLFQLILAYFQRK
VGEETGVKPGSEMLAAIEKAREAGADVLLIDRDIGLTFTRFWQKLTFVEKIKLIFHLVRSTFSGDEIEVDEMLEEDVLDM
LVKEFRKISPNAAKVLIDERDVYMAANLLNALSRYNRIVAVVGAGHRKGIEEALLKLKENPVNLRELEEVKKGRSYFKIF
MGAFTALIVGTFILIATSLNTEVLVQAFLYWFLINGVLSAVGASLARGHPLSIVTAFLCAWMTSLNPLVAAGWVSGLVEA
WIRKPTVEDFSKLVEAESLREMMQNKFFRVLLVAALTNVGSMIGTIYGGWYIISTFGVDVAKVVGERVVEVIGGLL

Sequences:

>Translated_396_residues
MEEKRLVIVGTAHVSKRSVEEVAEVIEREKPDAVAVELCPRRYHALVHGQREEISVADVIRKGNVFMLLFQLILAYFQRK
VGEETGVKPGSEMLAAIEKAREAGADVLLIDRDIGLTFTRFWQKLTFVEKIKLIFHLVRSTFSGDEIEVDEMLEEDVLDM
LVKEFRKISPNAAKVLIDERDVYMAANLLNALSRYNRIVAVVGAGHRKGIEEALLKLKENPVNLRELEEVKKGRSYFKIF
MGAFTALIVGTFILIATSLNTEVLVQAFLYWFLINGVLSAVGASLARGHPLSIVTAFLCAWMTSLNPLVAAGWVSGLVEA
WIRKPTVEDFSKLVEAESLREMMQNKFFRVLLVAALTNVGSMIGTIYGGWYIISTFGVDVAKVVGERVVEVIGGLL
>Mature_396_residues
MEEKRLVIVGTAHVSKRSVEEVAEVIEREKPDAVAVELCPRRYHALVHGQREEISVADVIRKGNVFMLLFQLILAYFQRK
VGEETGVKPGSEMLAAIEKAREAGADVLLIDRDIGLTFTRFWQKLTFVEKIKLIFHLVRSTFSGDEIEVDEMLEEDVLDM
LVKEFRKISPNAAKVLIDERDVYMAANLLNALSRYNRIVAVVGAGHRKGIEEALLKLKENPVNLRELEEVKKGRSYFKIF
MGAFTALIVGTFILIATSLNTEVLVQAFLYWFLINGVLSAVGASLARGHPLSIVTAFLCAWMTSLNPLVAAGWVSGLVEA
WIRKPTVEDFSKLVEAESLREMMQNKFFRVLLVAALTNVGSMIGTIYGGWYIISTFGVDVAKVVGERVVEVIGGLL

Specific function: Unknown

COG id: COG1916

COG function: function code S; Uncharacterized homolog of PrgY (pheromone shutdown protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI33342278, Length=203, Percent_Identity=29.5566502463054, Blast_Score=78, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71988206, Length=240, Percent_Identity=27.0833333333333, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71988217, Length=240, Percent_Identity=27.0833333333333, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24646455, Length=202, Percent_Identity=31.1881188118812, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357445, Length=202, Percent_Identity=31.1881188118812, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002816
- InterPro:   IPR005230 [H]

Pfam domain/function: PF01963 TraB [H]

EC number: NA

Molecular weight: Translated: 44189; Mature: 44189

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKRLVIVGTAHVSKRSVEEVAEVIEREKPDAVAVELCPRRYHALVHGQREEISVADVI
CCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RKGNVFMLLFQLILAYFQRKVGEETGVKPGSEMLAAIEKAREAGADVLLIDRDIGLTFTR
HCCCHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
FWQKLTFVEKIKLIFHLVRSTFSGDEIEVDEMLEEDVLDMLVKEFRKISPNAAKVLIDER
HHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCC
DVYMAANLLNALSRYNRIVAVVGAGHRKGIEEALLKLKENPVNLRELEEVKKGRSYFKIF
HHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
MGAFTALIVGTFILIATSLNTEVLVQAFLYWFLINGVLSAVGASLARGHPLSIVTAFLCA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
WMTSLNPLVAAGWVSGLVEAWIRKPTVEDFSKLVEAESLREMMQNKFFRVLLVAALTNVG
HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMIGTIYGGWYIISTFGVDVAKVVGERVVEVIGGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEEKRLVIVGTAHVSKRSVEEVAEVIEREKPDAVAVELCPRRYHALVHGQREEISVADVI
CCCCCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
RKGNVFMLLFQLILAYFQRKVGEETGVKPGSEMLAAIEKAREAGADVLLIDRDIGLTFTR
HCCCHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
FWQKLTFVEKIKLIFHLVRSTFSGDEIEVDEMLEEDVLDMLVKEFRKISPNAAKVLIDER
HHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCC
DVYMAANLLNALSRYNRIVAVVGAGHRKGIEEALLKLKENPVNLRELEEVKKGRSYFKIF
HHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
MGAFTALIVGTFILIATSLNTEVLVQAFLYWFLINGVLSAVGASLARGHPLSIVTAFLCA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
WMTSLNPLVAAGWVSGLVEAWIRKPTVEDFSKLVEAESLREMMQNKFFRVLLVAALTNVG
HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMIGTIYGGWYIISTFGVDVAKVVGERVVEVIGGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]